Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DA787_RS18290 Genome accession   NZ_CP033205
Coordinates   3505217..3505906 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain MBI 600     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3500217..3510906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA787_RS18255 (DA787_18240) flgN 3500397..3500879 (-) 483 WP_003227999.1 flagellar protein FlgN -
  DA787_RS18260 (DA787_18245) flgM 3500895..3501161 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  DA787_RS18265 (DA787_18250) yvyF 3501242..3501661 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  DA787_RS18270 (DA787_18255) comFC 3501735..3502457 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  DA787_RS18275 (DA787_18260) comFB 3502421..3502717 (-) 297 WP_003227989.1 late competence protein ComFB -
  DA787_RS18280 (DA787_18265) comFA 3502777..3504168 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  DA787_RS18285 (DA787_18270) fakBA 3504274..3505119 (-) 846 WP_003244125.1 DegV family protein -
  DA787_RS18290 (DA787_18275) degU 3505217..3505906 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DA787_RS18295 (DA787_18280) degS 3505989..3507146 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  DA787_RS18300 (DA787_18285) yvyE 3507363..3508016 (+) 654 WP_003227979.1 YigZ family protein -
  DA787_RS18305 (DA787_18290) tagV 3508016..3509191 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  DA787_RS18310 (DA787_18295) tagO 3509264..3510340 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=322589 DA787_RS18290 WP_003219701.1 3505217..3505906(-) (degU) [Bacillus subtilis strain MBI 600]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=322589 DA787_RS18290 WP_003219701.1 3505217..3505906(-) (degU) [Bacillus subtilis strain MBI 600]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment