Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | DA787_RS12975 | Genome accession | NZ_CP033205 |
| Coordinates | 2511271..2511681 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain MBI 600 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2504374..2558127 | 2511271..2511681 | within | 0 |
Gene organization within MGE regions
Location: 2504374..2558127
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA787_RS12935 (DA787_12920) | yqeH | 2504374..2505474 (-) | 1101 | WP_003229966.1 | ribosome biogenesis GTPase YqeH | - |
| DA787_RS12940 (DA787_12925) | yqeG | 2505478..2505996 (-) | 519 | WP_003226126.1 | YqeG family HAD IIIA-type phosphatase | - |
| DA787_RS12945 (DA787_12930) | - | 2506358..2506498 (+) | 141 | WP_003226124.1 | sporulation histidine kinase inhibitor Sda | - |
| DA787_RS12950 (DA787_12935) | yqeF | 2506804..2507535 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| DA787_RS12955 (DA787_12940) | cwlH | 2507787..2508539 (-) | 753 | WP_003229963.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| DA787_RS12960 (DA787_12945) | yqeD | 2508726..2509352 (+) | 627 | WP_003229962.1 | TVP38/TMEM64 family protein | - |
| DA787_RS12965 (DA787_12950) | gnd | 2509371..2510264 (-) | 894 | WP_003229961.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| DA787_RS12970 (DA787_12955) | yqeB | 2510516..2511238 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| DA787_RS12975 (DA787_12960) | nucA/comI | 2511271..2511681 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| DA787_RS12980 (DA787_12965) | - | 2511877..2512224 (+) | 348 | Protein_2486 | sigma-70 family RNA polymerase sigma factor | - |
| DA787_RS12985 (DA787_12970) | spoIVCA | 2512255..2513715 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| DA787_RS21440 (DA787_12975) | - | 2513673..2513851 (-) | 179 | Protein_2488 | hypothetical protein | - |
| DA787_RS12995 (DA787_12980) | arsC | 2514206..2514625 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| DA787_RS13000 (DA787_12985) | acr3 | 2514637..2515677 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| DA787_RS13005 (DA787_12990) | arsK | 2515700..2516140 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| DA787_RS13010 (DA787_12995) | arsR | 2516201..2516518 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| DA787_RS13015 (DA787_13000) | yqcI | 2516890..2517654 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| DA787_RS13020 (DA787_13005) | rapE | 2518097..2519224 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| DA787_RS13025 (DA787_13010) | phrE | 2519214..2519348 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| DA787_RS13030 (DA787_13015) | - | 2519458..2519616 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| DA787_RS13035 (DA787_13020) | yqcG | 2519986..2521581 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| DA787_RS13040 (DA787_13025) | yqcF | 2521596..2522174 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| DA787_RS13045 (DA787_13030) | - | 2522292..2522438 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| DA787_RS13050 (DA787_13035) | - | 2522435..2522797 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| DA787_RS13055 (DA787_13040) | - | 2522813..2523292 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| DA787_RS13060 (DA787_13045) | cwlA | 2523457..2524275 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| DA787_RS13065 (DA787_13050) | skhD | 2524320..2524742 (-) | 423 | WP_003246208.1 | holin family protein | - |
| DA787_RS13070 (DA787_13055) | xepAK | 2524787..2525680 (-) | 894 | WP_003246010.1 | hypothetical protein | - |
| DA787_RS13075 (DA787_13060) | yqcE | 2525768..2525932 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| DA787_RS13080 (DA787_13065) | yqcD | 2525929..2526264 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| DA787_RS13085 (DA787_13070) | yqcC | 2526274..2527374 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| DA787_RS13090 (DA787_13075) | - | 2527377..2527649 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| DA787_RS13095 (DA787_13080) | yqcA | 2527646..2528224 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| DA787_RS13100 (DA787_13085) | yqbT | 2528208..2529254 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| DA787_RS13105 (DA787_13090) | yqbS | 2529247..2529672 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| DA787_RS13110 (DA787_13095) | yqbR | 2529685..2529948 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| DA787_RS13115 (DA787_13100) | yqbQ | 2529945..2530925 (-) | 981 | WP_004398524.1 | hypothetical protein | - |
| DA787_RS13120 (DA787_13105) | yqbP | 2530938..2531597 (-) | 660 | WP_004398548.1 | LysM peptidoglycan-binding domain-containing protein | - |
| DA787_RS13125 (DA787_13110) | yqbO | 2531590..2536347 (-) | 4758 | WP_003246092.1 | phage tail tape measure protein | - |
| DA787_RS13130 (DA787_13115) | - | 2536350..2536487 (-) | 138 | WP_003229934.1 | hypothetical protein | - |
| DA787_RS13135 (DA787_13120) | - | 2536529..2536978 (-) | 450 | WP_003229933.1 | phage portal protein | - |
| DA787_RS13140 (DA787_13125) | txpA | 2537124..2537303 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| DA787_RS13145 (DA787_13130) | bsrH | 2537683..2537772 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| DA787_RS13150 (DA787_13135) | yqbM | 2538026..2538469 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| DA787_RS13155 (DA787_13140) | yqbK | 2538472..2539872 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| DA787_RS13160 (DA787_13145) | - | 2539873..2540064 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| DA787_RS13165 (DA787_13150) | yqbJ | 2540061..2540498 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| DA787_RS13170 (DA787_13155) | yqbI | 2540511..2541014 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| DA787_RS13175 (DA787_13160) | yqbH | 2541011..2541373 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| DA787_RS13180 (DA787_13165) | gkpG | 2541370..2541765 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| DA787_RS13185 (DA787_13170) | yqbF | 2541769..2542080 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| DA787_RS13190 (DA787_13175) | skdG | 2542091..2543026 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| DA787_RS13195 (DA787_13180) | yqbD | 2543045..2544013 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| DA787_RS13200 (DA787_13185) | - | 2544046..2544699 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| DA787_RS13205 (DA787_13190) | yqbB | 2544740..2545657 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| DA787_RS13210 (DA787_13195) | yqbA | 2545654..2547186 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| DA787_RS13215 (DA787_13200) | stmB | 2547190..2548485 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| DA787_RS13220 (DA787_13205) | terS | 2548478..2549197 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| DA787_RS13225 (DA787_13210) | - | 2549265..2549729 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| DA787_RS13230 (DA787_13215) | yqaQ | 2549873..2550328 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| DA787_RS13235 (DA787_13220) | - | 2550526..2551455 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| DA787_RS13240 (DA787_13225) | yqaO | 2551529..2551735 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| DA787_RS13245 (DA787_13230) | yqaN | 2551817..2552245 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DA787_RS13250 (DA787_13235) | - | 2552341..2552490 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| DA787_RS13255 (DA787_13240) | sknM | 2552481..2553422 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| DA787_RS13260 (DA787_13245) | yqaL | 2553304..2553981 (-) | 678 | WP_010886575.1 | DnaD domain protein | - |
| DA787_RS13265 (DA787_13250) | recT | 2554057..2554911 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| DA787_RS13270 (DA787_13255) | yqaJ | 2554914..2555873 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| DA787_RS13275 (DA787_13260) | - | 2555979..2556173 (-) | 195 | WP_003229905.1 | hypothetical protein | - |
| DA787_RS13280 (DA787_13265) | - | 2556133..2556306 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| DA787_RS13285 (DA787_13270) | sknH | 2556303..2556560 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| DA787_RS13290 (DA787_13275) | yqaG | 2556557..2557126 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| DA787_RS13295 (DA787_13280) | - | 2557200..2557340 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| DA787_RS13300 (DA787_13285) | yqaF | 2557370..2557600 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| DA787_RS13305 (DA787_13290) | sknR | 2557777..2558127 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=322571 DA787_RS12975 WP_009967785.1 2511271..2511681(-) (nucA/comI) [Bacillus subtilis strain MBI 600]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=322571 DA787_RS12975 WP_009967785.1 2511271..2511681(-) (nucA/comI) [Bacillus subtilis strain MBI 600]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |