Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DA787_RS11195 Genome accession   NZ_CP033205
Coordinates   2199684..2200304 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain MBI 600     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2194684..2205304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA787_RS11155 (DA787_11140) ptsA 2195815..2196321 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  DA787_RS11160 (DA787_11145) ypqA 2196459..2196878 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  DA787_RS11165 (DA787_11150) sppG 2196899..2197276 (-) 378 WP_004398696.1 YppG family protein -
  DA787_RS11170 (DA787_11155) yppF 2197464..2197652 (+) 189 WP_129137758.1 YppF family protein -
  DA787_RS11175 (DA787_11160) yppE 2197691..2198062 (-) 372 WP_003246080.1 YppE family protein -
  DA787_RS11180 (DA787_11165) yppD 2198108..2198353 (-) 246 WP_004398488.1 YppD family protein -
  DA787_RS11185 (DA787_11170) sspM 2198552..2198656 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  DA787_RS11190 (DA787_11175) yppC 2198681..2199643 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  DA787_RS11195 (DA787_11180) recU 2199684..2200304 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  DA787_RS11200 (DA787_11185) ponA 2200326..2203070 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  DA787_RS11205 (DA787_11190) ypoC 2203146..2203640 (-) 495 WP_009967579.1 YpoC family protein -
  DA787_RS11210 (DA787_11195) nth 2203637..2204296 (-) 660 WP_009967580.1 endonuclease III -
  DA787_RS11215 (DA787_11200) dnaD 2204315..2205013 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=322555 DA787_RS11195 WP_004399067.1 2199684..2200304(+) (recU) [Bacillus subtilis strain MBI 600]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=322555 DA787_RS11195 WP_004399067.1 2199684..2200304(+) (recU) [Bacillus subtilis strain MBI 600]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment