Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   FF960_RS07020 Genome accession   NZ_CP040625
Coordinates   1398219..1398842 (-) Length   207 a.a.
NCBI ID   WP_001208760.1    Uniprot ID   Q93SM0
Organism   Staphylococcus aureus strain JKD6004-DR     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1393219..1403842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF960_RS06995 (FF960_07015) rpmG 1394795..1394944 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  FF960_RS07000 (FF960_07020) rpsN 1395398..1395667 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  FF960_RS07005 (FF960_07025) guaC 1395824..1396801 (+) 978 WP_000688126.1 GMP reductase -
  FF960_RS07015 (FF960_07035) - 1396823..1397839 (+) 1017 WP_001789887.1 CAP domain-containing protein -
  FF960_RS07020 (FF960_07040) dinR/lexA 1398219..1398842 (-) 624 WP_001208760.1 transcriptional repressor LexA Regulator
  FF960_RS07025 (FF960_07045) sosA 1398985..1399218 (+) 234 WP_116100521.1 DNA damage-induced cell division inhibitor SosA -
  FF960_RS07030 (FF960_07050) - 1399354..1399593 (+) 240 WP_000071351.1 DUF896 domain-containing protein -
  FF960_RS07035 (FF960_07055) recP/tkt 1399714..1401702 (+) 1989 WP_000481443.1 transketolase Machinery gene
  FF960_RS07040 (FF960_07060) - 1401980..1402222 (+) 243 WP_000246909.1 YneF family protein -
  FF960_RS07045 (FF960_07065) - 1402209..1402307 (+) 99 WP_001789897.1 hypothetical protein -
  FF960_RS07050 (FF960_07070) - 1402401..1402868 (+) 468 WP_000966142.1 CcdC family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23301.46 Da        Isoelectric Point: 4.8811

>NTDB_id=322540 FF960_RS07020 WP_001208760.1 1398219..1398842(-) (dinR/lexA) [Staphylococcus aureus strain JKD6004-DR]
MRELTKRQSEIYNYIKQVVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEIVSDQTNDNINME
ETIHVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAMT
EEDEATVKRFYKEKNRYRLQPENSTMEPIYLDNVAVIGKVIGLYREM

Nucleotide


Download         Length: 624 bp        

>NTDB_id=322540 FF960_RS07020 WP_001208760.1 1398219..1398842(-) (dinR/lexA) [Staphylococcus aureus strain JKD6004-DR]
ATGAGAGAATTAACAAAACGACAAAGCGAAATATATAACTATATTAAACAAGTTGTTCAAACGAAAGGTTATCCGCCTAG
TGTTCGCGAAATTGGTGAAGCAGTTGGCTTAGCATCCAGTTCAACTGTTCATGGTCACCTTTCACGTCTTGAAGAAAAAG
GCTATATAAGAAGAGATCCAACGAAACCACGTGCTATAGAAATTGTAAGTGATCAAACAAATGATAATATTAATATGGAA
GAAACGATTCATGTGCCAGTTATTGGTAAAGTCACAGCAGGTGTTCCTATTACCGCAGTAGAAAATATTGAAGAATATTT
TCCATTACCTGAACACTTAACATCGACACACAATAGCGACATATTCATATTAAACGTCGTAGGCGACAGTATGATTGAGG
CTGGTATATTAGACGGAGACAAAGTAATTGTTCGCAGTCAAACCATAGCAGAAAATGGAGACATTATTGTTGCTATGACT
GAGGAAGATGAAGCAACTGTCAAACGCTTCTATAAAGAAAAAAATCGTTATCGATTACAACCTGAAAATAGTACAATGGA
GCCAATTTACCTAGACAATGTTGCTGTAATTGGGAAAGTAATTGGTTTGTACCGCGAAATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(86-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q93SM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

66.341

99.034

0.657

Multiple sequence alignment