Detailed information NTG0322478

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: D2B33_RS20255
• Genome accession: NZ_CP033198
• Coordinates: 4015911..4017023 (-)
• Length: 370 a.a.
• NCBI ID: WP_003178089.1
• Uniprot ID: A0A415J9T0
• Organism: Bacillus paralicheniformis strain FA6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4010911..4022023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2B33_RS20240 (D2B33_20530)	gyrA	4011013..4013487 (-)	2475	WP_020449767.1	DNA gyrase subunit A	-
D2B33_RS20245 (D2B33_20535)	gyrB	4013677..4015590 (-)	1914	WP_020449766.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
D2B33_RS20250 (D2B33_20540)	remB	4015651..4015893 (-)	243	WP_020449765.1	extracellular matrix regulator RemB	-
D2B33_RS20255 (D2B33_20545)	recF	4015911..4017023 (-)	1113	WP_003178089.1	DNA replication/repair protein RecF	Machinery gene
D2B33_RS20260 (D2B33_20550)	yaaA	4017040..4017255 (-)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
D2B33_RS20265 (D2B33_20555)	dnaN	4017423..4018559 (-)	1137	WP_020449764.1	DNA polymerase III subunit beta	-
D2B33_RS20270 (D2B33_20560)	dnaA	4018737..4020077 (-)	1341	WP_009330034.1	chromosomal replication initiator protein DnaA	-
D2B33_RS20275 (D2B33_20565)	rpmH	4020717..4020851 (+)	135	WP_003178075.1	50S ribosomal protein L34	-
D2B33_RS20280 (D2B33_20570)	rnpA	4020936..4021295 (+)	360	WP_020453656.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=322478 D2B33_RS20255 WP_003178089.1 4015911..4017023(-) (recF) [Bacillus paralicheniformis strain FA6]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=322478 D2B33_RS20255 WP_003178089.1 4015911..4017023(-) (recF) [Bacillus paralicheniformis strain FA6]
TTGTATATCCAAAATCTAACATTATCGTCTTACCGTAATTATGAACGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCCAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTTAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCAGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGCTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGTCAGCAGCGAACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTTTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACTTTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A415J9T0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.13	99.459	0.886