Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D2B33_RS19675 Genome accession   NZ_CP033198
Coordinates   3908509..3909888 (-) Length   459 a.a.
NCBI ID   WP_020449839.1    Uniprot ID   A0AAW6KF37
Organism   Bacillus paralicheniformis strain FA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3903509..3914888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2B33_RS19655 (D2B33_19940) ispF 3905028..3905504 (-) 477 WP_020449842.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  D2B33_RS19660 (D2B33_19945) ispD 3905497..3906192 (-) 696 WP_020449841.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D2B33_RS19665 (D2B33_19950) - 3906209..3907297 (-) 1089 WP_009330350.1 PIN/TRAM domain-containing protein -
  D2B33_RS19670 (D2B33_19955) disA 3907429..3908505 (-) 1077 WP_020449840.1 DNA integrity scanning diadenylate cyclase DisA -
  D2B33_RS19675 (D2B33_19960) radA 3908509..3909888 (-) 1380 WP_020449839.1 DNA repair protein RadA Machinery gene
  D2B33_RS19680 (D2B33_19965) clpC 3909968..3912400 (-) 2433 WP_020449838.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  D2B33_RS19685 (D2B33_19970) - 3912397..3913488 (-) 1092 WP_020449837.1 protein arginine kinase -
  D2B33_RS19690 (D2B33_19975) - 3913488..3914042 (-) 555 WP_003178271.1 UvrB/UvrC motif-containing protein -
  D2B33_RS19695 (D2B33_19980) - 3914057..3914521 (-) 465 WP_020449835.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49848.28 Da        Isoelectric Point: 7.4339

>NTDB_id=322474 D2B33_RS19675 WP_020449839.1 3908509..3909888(-) (radA) [Bacillus paralicheniformis strain FA6]
MAKTKTKFICHSCGYESAKWMGKCPGCGTWNTMVEETIKKPAANRRTAFSHSVQTVQKPSPLTSIETTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=322474 D2B33_RS19675 WP_020449839.1 3908509..3909888(-) (radA) [Bacillus paralicheniformis strain FA6]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGTTACGAATCCGCCAAGTGGATGGGGAAGTGCCCCGGATG
CGGCACATGGAATACCATGGTGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACGGTGCAAAAGCCTTCACCTCTCACTTCAATCGAAACAACAGAAGAGCCGCGAATTAAAACGAAACTGGGCGAATTC
AACCGCGTCTTGGGAAACGGTATTGTCAAAGGTTCACTCGTTTTAATCGGAGGCGATCCCGGCATCGGGAAATCAACCTT
GCTGCTTCAAGTATCTGCCCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGTGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGCATCAACAGTCCCACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAATCCATCATTCGTGGTGGTTGATTCGATTCAAACCGTTTACCAAAGTGATATTACATCTGC
TCCAGGCAGCGTGTCCCAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACAAAAGGGATTCCGATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTCCTTTATTTT
GAAGGTGAGCGGCATCATACATTTCGGATTTTAAGAGCCGTCAAAAACCGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTGACAGAAGTGCTGAATCCGTCGGAGATCTTTCTCGAAGAGCGCTCGGCTGGAGCAGCCG
GCTCGAGTGTCGTGGCTTCAATGGAAGGCACGAGGCCGGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCGACGAGTTTT
GGAAATCCGCGCAGGATGGCAACCGGAATTGATCATAACCGCGTCTCATTGCTGATGGCGGTTTTAGAAAAAAGGGTGGG
GCTGCTGCTGCAAAATCAAGACGCCTATTTAAAAGTCGCCGGCGGCGTCAAGCTGGACGAGCCGGCGATCGACCTCGCCG
TTGCGGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCATCCGACGGATTGTTTTATCGGCGAAGTCGGCTTGACA
GGGGAAGTCCGCAGAGTATCAAGGATAGAACAGAGGGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTGGAAGGATGGACAAAGCCGAAAGGAATTGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

91.048

99.782

0.908
  radA Streptococcus mitis NCTC 12261

62.031

98.693

0.612
  radA Streptococcus pneumoniae Rx1

62.031

98.693

0.612
  radA Streptococcus pneumoniae D39

62.031

98.693

0.612
  radA Streptococcus pneumoniae R6

62.031

98.693

0.612
  radA Streptococcus pneumoniae TIGR4

62.031

98.693

0.612
  radA Streptococcus mitis SK321

61.81

98.693

0.61

Multiple sequence alignment