Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   D2B33_RS18160 Genome accession   NZ_CP033198
Coordinates   3629745..3630143 (+) Length   132 a.a.
NCBI ID   WP_023855672.1    Uniprot ID   A0AAW6KF42
Organism   Bacillus paralicheniformis strain FA6     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3624745..3635143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2B33_RS18145 (D2B33_18415) - 3626854..3627594 (+) 741 WP_020450098.1 ribonuclease YeeF family protein -
  D2B33_RS18150 (D2B33_18420) - 3627999..3628802 (-) 804 WP_025810788.1 protein kinase domain-containing protein -
  D2B33_RS22505 - 3628808..3628978 (-) 171 WP_023855671.1 hypothetical protein -
  D2B33_RS18155 (D2B33_18425) nucA/comI 3629281..3629727 (+) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D2B33_RS18160 (D2B33_18430) nin/comJ 3629745..3630143 (+) 399 WP_023855672.1 competence protein ComJ Regulator
  D2B33_RS18165 (D2B33_18435) - 3630183..3631619 (-) 1437 WP_020450094.1 glycoside hydrolase family 1 protein -
  D2B33_RS18170 (D2B33_18440) - 3631689..3632414 (-) 726 WP_020450093.1 AAA family ATPase -
  D2B33_RS18175 (D2B33_18445) - 3632510..3633061 (-) 552 WP_020450092.1 NAD(P)H-dependent oxidoreductase -
  D2B33_RS18180 (D2B33_18450) - 3633245..3634120 (+) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -
  D2B33_RS18185 (D2B33_18455) - 3634132..3634815 (+) 684 WP_020450090.1 amino acid ABC transporter permease -
  D2B33_RS18190 - 3634974..3635135 (-) 162 WP_023855674.1 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14928.99 Da        Isoelectric Point: 5.1700

>NTDB_id=322472 D2B33_RS18160 WP_023855672.1 3629745..3630143(+) (nin/comJ) [Bacillus paralicheniformis strain FA6]
MIKKWEAEEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTAGEHAVSFEALDNTASLVEVRLNVQEQVPSFNRRVTVSF
DVLHGGVEIASVLSKKLSCDIPQGVYQLTCYTIMPDQSSTAKITYILDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=322472 D2B33_RS18160 WP_023855672.1 3629745..3630143(+) (nin/comJ) [Bacillus paralicheniformis strain FA6]
TTGATCAAAAAGTGGGAAGCAGAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAAAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGCTACACAGCGGGAGAACACGCGGTCTCGTTTGAAGCTCTCGATA
ATACGGCATCATTAGTAGAAGTTCGTTTGAATGTCCAGGAACAGGTTCCCTCCTTTAACAGGCGCGTCACCGTTTCTTTC
GACGTGCTTCATGGCGGGGTCGAAATTGCAAGCGTCCTATCCAAGAAATTGTCATGCGACATCCCGCAAGGCGTCTATCA
GCTGACATGCTATACGATTATGCCTGATCAAAGCAGCACTGCGAAGATCACCTATATTCTCGATTTTAAACAGGCCTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

51.562

96.97

0.5

Multiple sequence alignment