Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D2B33_RS14355 Genome accession   NZ_CP033198
Coordinates   2831520..2832098 (-) Length   192 a.a.
NCBI ID   WP_020450829.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FA6     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826520..2837098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2B33_RS14335 (D2B33_14525) - 2827907..2829682 (+) 1776 WP_020450833.1 S8 family peptidase -
  D2B33_RS14340 (D2B33_14530) lepB 2829811..2830329 (-) 519 WP_020450832.1 signal peptidase I -
  D2B33_RS14345 (D2B33_14535) - 2830342..2830953 (-) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  D2B33_RS14350 (D2B33_14540) - 2831161..2831526 (+) 366 WP_020450830.1 hypothetical protein -
  D2B33_RS14355 (D2B33_14545) comK 2831520..2832098 (-) 579 WP_020450829.1 competence protein ComK Regulator
  D2B33_RS14360 (D2B33_14550) - 2832371..2832604 (+) 234 WP_020450828.1 IDEAL domain-containing protein -
  D2B33_RS14365 (D2B33_14555) - 2832673..2833530 (-) 858 WP_020450827.1 SDR family oxidoreductase -
  D2B33_RS14370 (D2B33_14560) - 2833651..2835201 (+) 1551 WP_044803231.1 FAD-dependent oxidoreductase -
  D2B33_RS22975 - 2835422..2835793 (+) 372 Protein_2891 protoglobin family protein -
  D2B33_RS22980 - 2835803..2836600 (+) 798 WP_409333862.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22377.61 Da        Isoelectric Point: 8.2478

>NTDB_id=322463 D2B33_RS14355 WP_020450829.1 2831520..2832098(-) (comK) [Bacillus paralicheniformis strain FA6]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFLVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=322463 D2B33_RS14355 WP_020450829.1 2831520..2832098(-) (comK) [Bacillus paralicheniformis strain FA6]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCTCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACAGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment