Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   D2B33_RS12250 Genome accession   NZ_CP033198
Coordinates   2417954..2418541 (-) Length   195 a.a.
NCBI ID   WP_020451209.1    Uniprot ID   A0A6I7TW81
Organism   Bacillus paralicheniformis strain FA6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2412954..2423541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2B33_RS12225 (D2B33_12380) mobB 2413189..2413716 (-) 528 WP_020451214.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  D2B33_RS12230 (D2B33_12385) glp 2413683..2414975 (-) 1293 WP_122934922.1 gephyrin-like molybdotransferase Glp -
  D2B33_RS12235 (D2B33_12390) - 2414994..2416007 (-) 1014 WP_020451212.1 molybdopterin-synthase adenylyltransferase MoeB -
  D2B33_RS12240 (D2B33_12395) - 2416113..2416700 (-) 588 WP_020451211.1 molybdenum cofactor guanylyltransferase -
  D2B33_RS12245 (D2B33_12400) - 2416853..2417809 (+) 957 WP_020451210.1 sporulation protein YknT -
  D2B33_RS12250 (D2B33_12405) rok 2417954..2418541 (-) 588 WP_020451209.1 transcriptional regulator Rok Regulator
  D2B33_RS12255 (D2B33_12410) - 2419088..2419546 (-) 459 WP_020451208.1 redoxin domain-containing protein -
  D2B33_RS12260 (D2B33_12415) ahpA 2419636..2420178 (-) 543 WP_020451207.1 biofilm-specific peroxidase AhpA -
  D2B33_RS12265 (D2B33_12420) - 2420474..2420719 (-) 246 WP_003181323.1 YkuS family protein -
  D2B33_RS12270 (D2B33_12425) - 2420782..2421906 (-) 1125 WP_020451206.1 N-acetyldiaminopimelate deacetylase -
  D2B33_RS12275 (D2B33_12430) dapD 2421976..2422686 (-) 711 WP_020451205.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  D2B33_RS12280 (D2B33_12435) - 2422793..2423245 (-) 453 WP_020451204.1 flavodoxin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22537.49 Da        Isoelectric Point: 9.9960

>NTDB_id=322450 D2B33_RS12250 WP_020451209.1 2417954..2418541(-) (rok) [Bacillus paralicheniformis strain FA6]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=322450 D2B33_RS12250 WP_020451209.1 2417954..2418541(-) (rok) [Bacillus paralicheniformis strain FA6]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTGGAGCAGCTGAATGAGGCTGAGGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAATATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACGGAATCTCTCCCTGTTTTAGCTGAATTAGCTGCGCAGGAGATGAAGAGCTATCAGCAACAACAG
CAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGATGG
AACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAACTGCGTGAAGCGGCGATTAAAACATTAA
AACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAATATG
ACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGGTGA
GATTTCTACCGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TW81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.684

97.436

0.815

Multiple sequence alignment