Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SMI_RS00255 Genome accession   NC_013853
Coordinates   51856..52626 (+) Length   256 a.a.
NCBI ID   WP_000616155.1    Uniprot ID   -
Organism   Streptococcus mitis B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 46856..57626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMI_RS00240 (smi_0049) - 48456..48893 (+) 438 WP_000076491.1 CoA-binding protein -
  SMI_RS00245 (smi_0050) - 49111..50121 (-) 1011 WP_000009146.1 YeiH family protein -
  SMI_RS00250 (smi_0051) - 50690..51859 (+) 1170 WP_000366367.1 pyridoxal phosphate-dependent aminotransferase -
  SMI_RS00255 (smi_0052) recO 51856..52626 (+) 771 WP_000616155.1 DNA repair protein RecO Machinery gene
  SMI_RS00260 (smi_0053) plsX 52623..53615 (+) 993 WP_000717437.1 phosphate acyltransferase PlsX -
  SMI_RS00265 (smi_0054) - 53621..53854 (+) 234 WP_000136448.1 acyl carrier protein -
  SMI_RS00270 (smi_0055) - 54306..55487 (+) 1182 WP_000748701.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SMI_RS00275 (smi_0056) - 55570..56445 (-) 876 WP_001267146.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29880.34 Da        Isoelectric Point: 5.1721

>NTDB_id=32245 SMI_RS00255 WP_000616155.1 51856..52626(+) (recO) [Streptococcus mitis B6]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHVGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDASLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLSDWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=32245 SMI_RS00255 WP_000616155.1 51856..52626(+) (recO) [Streptococcus mitis B6]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAGATTTT
TACAGAGCAGGCTGGTAAGCGCATGTTTTTCGTCAAACACGTTGGTCAGTCCAAACTGGCGCCGGTTATTCAGCCTTTGG
TGCTGGCTCGATTTCTCTTGCGAATCAATGATGATGGGCTTAGCTACATCGAGGACTATCATGAGGTTATGACCTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTAGCGGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTTCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCTGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACCAGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGATCGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAGACCTTGGAGACCATTTCGCTCAAGCCTG
AAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTATCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

97.266

100

0.973

Multiple sequence alignment