Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D2B33_RS12115 Genome accession   NZ_CP033198
Coordinates   2392874..2393161 (-) Length   95 a.a.
NCBI ID   WP_020451235.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FA6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2387874..2398161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2B33_RS12100 (D2B33_12255) ade 2388794..2390515 (-) 1722 WP_020451238.1 adenine deaminase -
  D2B33_RS12105 (D2B33_12260) - 2390643..2391305 (-) 663 WP_020451237.1 TrkA family potassium uptake protein -
  D2B33_RS12110 (D2B33_12265) - 2391369..2392706 (-) 1338 WP_020451236.1 ATP-binding protein -
  D2B33_RS12115 (D2B33_12270) abrB 2392874..2393161 (-) 288 WP_020451235.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D2B33_RS12120 (D2B33_12275) mreBH 2393467..2394474 (+) 1008 WP_020451234.1 rod-share determining protein MreBH -
  D2B33_RS12125 (D2B33_12280) - 2394548..2394679 (+) 132 WP_003181378.1 protein YkpC -
  D2B33_RS12130 (D2B33_12285) - 2394769..2396001 (+) 1233 WP_020451233.1 aminopeptidase -
  D2B33_RS12135 (D2B33_12290) - 2396126..2396500 (-) 375 WP_020451232.1 DUF4440 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10626.48 Da        Isoelectric Point: 5.8979

>NTDB_id=322449 D2B33_RS12115 WP_020451235.1 2392874..2393161(-) (abrB) [Bacillus paralicheniformis strain FA6]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=322449 D2B33_RS12115 WP_020451235.1 2392874..2393161(-) (abrB) [Bacillus paralicheniformis strain FA6]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTAATGACCGGTGAAATCACTTCTGAAAACCGCGAGTACGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCCGAA
TTGCTTTTGGAAGAAATAAAAGCTGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment