Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   D2B33_RS07295 Genome accession   NZ_CP033198
Coordinates   1378009..1378809 (+) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FA6     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373009..1383809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2B33_RS07275 (D2B33_07315) - 1373034..1373879 (+) 846 WP_020452130.1 TlyA family RNA methyltransferase -
  D2B33_RS07280 (D2B33_07320) ahrC 1374043..1374492 (+) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  D2B33_RS07285 (D2B33_07325) recN 1374524..1376254 (+) 1731 WP_020452128.1 DNA repair protein RecN Machinery gene
  D2B33_RS07290 (D2B33_07330) spoIVB 1376403..1377719 (+) 1317 WP_043054395.1 SpoIVB peptidase -
  D2B33_RS07295 (D2B33_07335) spo0A 1378009..1378809 (+) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  D2B33_RS07300 (D2B33_07340) - 1379150..1379446 (+) 297 WP_020452126.1 antimicrobial peptide LCI -
  D2B33_RS22395 - 1379576..1380145 (+) 570 WP_020452125.1 serine O-acetyltransferase -
  D2B33_RS07310 (D2B33_07355) - 1380645..1380950 (+) 306 WP_020452124.1 membrane lipoprotein lipid attachment site-containing protein -
  D2B33_RS07315 (D2B33_07360) - 1380986..1381606 (+) 621 WP_020452123.1 N-acetylmuramoyl-L-alanine amidase -
  D2B33_RS07320 (D2B33_07365) - 1381740..1382465 (+) 726 WP_020452122.1 glycerophosphodiester phosphodiesterase -
  D2B33_RS07325 (D2B33_07370) - 1382576..1382830 (-) 255 WP_020452121.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=322441 D2B33_RS07295 WP_003183361.1 1378009..1378809(+) (spo0A) [Bacillus paralicheniformis strain FA6]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=322441 D2B33_RS07295 WP_003183361.1 1378009..1378809(+) (spo0A) [Bacillus paralicheniformis strain FA6]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTACTTGGTGTCGCGTACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATCATGCCTCACCTCGATGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCTTCTCAAAGCAGTGTGCTTCGGCCGCAGCCGGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAACGACATCGA
ACTGCTCGGAAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGAGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCCAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGATTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment