Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   EBA20_RS16010 Genome accession   NZ_CP033197
Coordinates   3218079..3218480 (-) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas oryzae pv. oryzae strain KXO85     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3213079..3223480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA20_RS15995 (EBA20_15995) - 3215093..3217129 (-) 2037 WP_011258510.1 methyl-accepting chemotaxis protein -
  EBA20_RS16000 (EBA20_16000) - 3217169..3217699 (-) 531 WP_003482487.1 chemotaxis protein CheW -
  EBA20_RS16005 (EBA20_16005) - 3217699..3218061 (-) 363 WP_011258508.1 response regulator -
  EBA20_RS16010 (EBA20_16010) pilG 3218079..3218480 (-) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  EBA20_RS16015 (EBA20_16015) gshB 3218730..3219680 (+) 951 WP_011408182.1 glutathione synthase -
  EBA20_RS16020 (EBA20_16020) - 3219677..3220552 (+) 876 WP_011258506.1 TonB family protein -
  EBA20_RS16025 (EBA20_16025) - 3220845..3221759 (-) 915 WP_011258505.1 ADP-ribosylglycohydrolase family protein -
  EBA20_RS16030 (EBA20_16030) tsaB 3221756..3222475 (-) 720 WP_011408180.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=322397 EBA20_RS16010 WP_005913706.1 3218079..3218480(-) (pilG) [Xanthomonas oryzae pv. oryzae strain KXO85]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=322397 EBA20_RS16010 WP_005913706.1 3218079..3218480(-) (pilG) [Xanthomonas oryzae pv. oryzae strain KXO85]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTCAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTTGACATCATGATGCCGCGCCTGGATGGCTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTAATCATGTTGTCGTCCAAGGATGGGCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTATTGAGCGCAATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment