Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EBA24_RS08290 Genome accession   NZ_CP033189
Coordinates   1623172..1624623 (-) Length   483 a.a.
NCBI ID   WP_171970756.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain PXO421     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1618172..1629623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA24_RS08265 (EBA24_08235) - 1618420..1619049 (+) 630 WP_011408070.1 hypothetical protein -
  EBA24_RS08270 (EBA24_08240) - 1619019..1620545 (+) 1527 WP_042464666.1 membrane protein -
  EBA24_RS08275 (EBA24_08245) pilB 1620580..1622313 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EBA24_RS25070 - 1622322..1622546 (-) 225 WP_325167351.1 cell filamentation protein Fic -
  EBA24_RS25075 - 1622670..1622831 (-) 162 WP_153296778.1 hypothetical protein -
  EBA24_RS08285 (EBA24_08255) - 1622893..1623099 (-) 207 WP_027703281.1 YhfG family protein -
  EBA24_RS08290 (EBA24_08260) pilR 1623172..1624623 (-) 1452 WP_171970756.1 sigma-54 dependent transcriptional regulator Regulator
  EBA24_RS08295 (EBA24_08265) - 1624894..1626507 (-) 1614 WP_011258366.1 HAMP domain-containing sensor histidine kinase -
  EBA24_RS08300 (EBA24_08270) sucC 1626741..1627910 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  EBA24_RS08305 (EBA24_08275) sucD 1627935..1628810 (+) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  EBA24_RS08310 (EBA24_08280) - 1629130..1629426 (+) 297 WP_011408075.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52446.18 Da        Isoelectric Point: 6.8290

>NTDB_id=322274 EBA24_RS08290 WP_171970756.1 1623172..1624623(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO421]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=322274 EBA24_RS08290 WP_171970756.1 1623172..1624623(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO421]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462

Multiple sequence alignment