Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | EBA24_RS08255 | Genome accession | NZ_CP033189 |
| Coordinates | 1616261..1616686 (+) | Length | 141 a.a. |
| NCBI ID | WP_011408068.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzae strain PXO421 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1605474..1619049 | 1616261..1616686 | within | 0 |
Gene organization within MGE regions
Location: 1605474..1619049
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBA24_RS08180 | - | 1605623..1605922 (+) | 300 | WP_125168747.1 | hypothetical protein | - |
| EBA24_RS08185 | - | 1605919..1606248 (+) | 330 | WP_125168748.1 | hypothetical protein | - |
| EBA24_RS08190 (EBA24_08160) | - | 1606325..1607758 (+) | 1434 | Protein_1471 | RHS repeat-associated core domain-containing protein | - |
| EBA24_RS08195 (EBA24_08165) | - | 1607764..1608132 (+) | 369 | WP_133260527.1 | DUF6869 domain-containing protein | - |
| EBA24_RS08200 (EBA24_08170) | - | 1608302..1609270 (-) | 969 | WP_011409545.1 | IS5-like element ISXo1 family transposase | - |
| EBA24_RS08205 (EBA24_08175) | - | 1609366..1609533 (+) | 168 | Protein_1474 | IS701 family transposase | - |
| EBA24_RS08215 (EBA24_08185) | - | 1609651..1609872 (+) | 222 | Protein_1475 | IS4 family transposase | - |
| EBA24_RS08220 (EBA24_08190) | - | 1609962..1610918 (+) | 957 | WP_041182041.1 | IS30-like element IS1112a family transposase | - |
| EBA24_RS08225 (EBA24_08195) | - | 1610902..1611204 (+) | 303 | WP_158645227.1 | hypothetical protein | - |
| EBA24_RS08235 (EBA24_08205) | - | 1611765..1613084 (-) | 1320 | WP_133260528.1 | IS701-like element ISXo15 family transposase | - |
| EBA24_RS08240 (EBA24_08210) | coaE | 1613155..1613763 (-) | 609 | WP_011258357.1 | dephospho-CoA kinase | - |
| EBA24_RS08245 (EBA24_08215) | - | 1613777..1614640 (-) | 864 | WP_011258358.1 | A24 family peptidase | - |
| EBA24_RS08250 (EBA24_08220) | pilC | 1614647..1615906 (-) | 1260 | WP_011408067.1 | type II secretion system F family protein | Machinery gene |
| EBA24_RS08255 (EBA24_08225) | pilA2 | 1616261..1616686 (+) | 426 | WP_011408068.1 | pilin | Machinery gene |
| EBA24_RS08260 (EBA24_08230) | - | 1616820..1618409 (+) | 1590 | WP_011408069.1 | phosphoethanolamine transferase | - |
| EBA24_RS08265 (EBA24_08235) | - | 1618420..1619049 (+) | 630 | WP_011408070.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14442.76 Da Isoelectric Point: 9.0090
>NTDB_id=322272 EBA24_RS08255 WP_011408068.1 1616261..1616686(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain PXO421]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
Nucleotide
Download Length: 426 bp
>NTDB_id=322272 EBA24_RS08255 WP_011408068.1 1616261..1616686(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain PXO421]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.471 |
96.454 |
0.496 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.471 |
96.454 |
0.496 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.818 |
100 |
0.489 |
| comP | Acinetobacter baylyi ADP1 |
43.537 |
100 |
0.454 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.054 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
37.278 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae MS11 |
37.5 |
100 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.446 |
98.582 |
0.418 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.222 |
95.745 |
0.404 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.333 |
100 |
0.397 |
| pilA | Acinetobacter baumannii strain A118 |
38.298 |
100 |
0.383 |
| pilA | Pseudomonas aeruginosa PAK |
36 |
100 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.157 |
90.071 |
0.362 |