Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   VS_RS16480 Genome accession   NC_011744
Coordinates   397101..398195 (+) Length   364 a.a.
NCBI ID   WP_012600319.1    Uniprot ID   -
Organism   Vibrio atlanticus     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 392101..403195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS16450 (VS_II0349) - 393850..394086 (-) 237 WP_009845678.1 hypothetical protein -
  VS_RS16455 (VS_II0350) - 394251..394877 (-) 627 WP_012600316.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  VS_RS16460 (VS_II0351) - 395048..395362 (-) 315 WP_004730049.1 DUF496 family protein -
  VS_RS16465 (VS_II0352) - 395558..395758 (+) 201 WP_009845676.1 hypothetical protein -
  VS_RS16470 (VS_II0353) - 395822..396478 (+) 657 WP_012600318.1 YceH family protein -
  VS_RS16475 (VS_II0354) - 396479..396793 (+) 315 WP_009845674.1 GIY-YIG nuclease family protein -
  VS_RS16480 (VS_II0355) luxP 397101..398195 (+) 1095 WP_012600319.1 substrate-binding domain-containing protein Regulator
  VS_RS16485 (VS_II0356) luxQ 398195..400780 (+) 2586 WP_012600320.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  VS_RS16490 (VS_II0358) - 400885..401235 (+) 351 WP_012600322.1 HopJ type III effector protein -
  VS_RS16495 (VS_II0359) - 401372..401680 (-) 309 WP_009845670.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41210.41 Da        Isoelectric Point: 4.9398

>NTDB_id=32219 VS_RS16480 WP_012600319.1 397101..398195(+) (luxP) [Vibrio atlanticus]
MKRLLILLGVAVFSASALSHGTHVLNGYWEYQDYLTKFPEQKALTDKMVEAVQNLPVPLRQVQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRDNANPSQQSISLQEAIENKTDYLIFTLETTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHMTGSLKLADYFKQVSEPDSKYSVLYRSEGYISDARGDTFIHDVNSDTNFALKSSFYTKSS
KESGYQAAKISLANDKDLNFIYACSTDVALGAAEAIRESGRDVLVNGWGGGSAELEAIARGDLDVTVMRMNDDTGIAMAE
AIKWDLTGLEVPTVYSGEFEIVTKEDSPDRILELKQRAFRYSDQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=32219 VS_RS16480 WP_012600319.1 397101..398195(+) (luxP) [Vibrio atlanticus]
ATGAAACGTTTACTTATATTATTGGGAGTTGCCGTGTTTTCTGCGTCTGCTCTCTCCCACGGTACCCACGTCCTGAATGG
CTATTGGGAATATCAGGATTACCTCACTAAATTTCCAGAGCAAAAAGCATTGACCGATAAAATGGTTGAAGCTGTGCAAA
ATCTCCCTGTGCCATTGAGGCAAGTTCAGGATGAACCTATCACGATTTCAGTTGTGTACCCGGGGCAACAGATCTCTGAT
TATTGGGTTCGTAATATCCAAGCCTTTGAGAAACGCCTAGATAAATTGAGAATTAATTATCAAATAAATCAGGTTTTTAC
TCGTGATAATGCCAACCCTTCTCAGCAAAGTATCTCTTTGCAAGAAGCGATTGAAAATAAAACGGATTATTTGATTTTTA
CGTTAGAGACGACGCGGCACCGTAAGTTTATTGAGCATGTGTTGAGCTCAACGGACACCAAATTGATTTTGCAAAATATT
ACCACGCCAGTACGCGCTTGGGCAGATAGGCAGCCGTTCATGTACGTGGGTTTCGACCATATGACAGGTAGCTTAAAGCT
GGCGGATTATTTCAAACAAGTGAGTGAACCGGACAGCAAGTATTCTGTGTTATATCGTTCTGAAGGTTATATTAGTGATG
CTCGTGGAGATACCTTTATCCATGATGTGAATTCTGATACTAACTTTGCTCTTAAGTCGTCGTTTTACACAAAATCAAGT
AAAGAGAGCGGTTACCAAGCAGCTAAAATCAGCCTAGCTAACGATAAGGATCTAAACTTTATTTATGCATGCTCAACGGA
TGTTGCTCTGGGCGCAGCAGAAGCTATTCGAGAATCTGGTCGAGATGTCTTAGTTAATGGCTGGGGAGGCGGCTCTGCAG
AATTGGAAGCTATAGCAAGGGGCGACTTAGATGTTACGGTCATGCGCATGAATGATGATACGGGTATTGCGATGGCAGAG
GCAATTAAATGGGATCTTACCGGGTTGGAAGTTCCTACCGTTTATTCAGGTGAGTTTGAAATTGTGACTAAAGAGGATTC
TCCAGATCGTATTTTAGAACTTAAGCAGCGAGCATTTAGGTACTCAGACCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.5

100

0.632

Multiple sequence alignment