Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   FC605_RS18855 Genome accession   NZ_CP040528
Coordinates   3641352..3642485 (-) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain PR10     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3636352..3647485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS18815 (FC605_18815) ywnA 3636516..3636917 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  FC605_RS18820 (FC605_18820) ureC 3637052..3638761 (-) 1710 WP_003243090.1 urease subunit alpha -
  FC605_RS18825 (FC605_18825) ureB 3638758..3639132 (-) 375 WP_003227726.1 urease subunit beta -
  FC605_RS18830 (FC605_18830) ureA 3639129..3639446 (-) 318 WP_003227724.1 urease subunit gamma -
  FC605_RS18835 (FC605_18835) - 3639637..3639797 (-) 161 Protein_3632 hypothetical protein -
  FC605_RS21575 - 3640091..3640244 (-) 154 Protein_3633 urea ABC transporter substrate-binding protein -
  FC605_RS18845 (FC605_18845) csbD 3640456..3640644 (-) 189 WP_003227718.1 stress response protein CsbD -
  FC605_RS18850 (FC605_18850) - 3640717..3641196 (-) 480 WP_003244390.1 hypothetical protein -
  FC605_RS18855 (FC605_18855) rapC 3641352..3642485 (-) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  FC605_RS18860 (FC605_18860) moaA 3642677..3643702 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  FC605_RS18865 (FC605_18865) fdhD 3643718..3644506 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  FC605_RS18870 (FC605_18870) - 3644739..3644900 (-) 162 WP_003227706.1 hypothetical protein -
  FC605_RS18875 (FC605_18875) ywmD 3644995..3645669 (-) 675 WP_003243553.1 VWA domain-containing protein -
  FC605_RS18880 (FC605_18880) - 3645722..3645862 (-) 141 WP_003227702.1 hypothetical protein -
  FC605_RS18885 (FC605_18885) ywmC 3645993..3646676 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=321977 FC605_RS18855 WP_014478242.1 3641352..3642485(-) (rapC) [Bacillus subtilis strain PR10]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=321977 FC605_RS18855 WP_014478242.1 3641352..3642485(-) (rapC) [Bacillus subtilis strain PR10]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGTATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment