Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FC605_RS10465 Genome accession   NZ_CP040528
Coordinates   2089882..2091657 (-) Length   591 a.a.
NCBI ID   WP_080529427.1    Uniprot ID   -
Organism   Bacillus subtilis strain PR10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2084882..2096657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS10445 (FC605_10445) desE 2085269..2086327 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  FC605_RS10450 (FC605_10450) desK 2086447..2087559 (+) 1113 WP_080529425.1 two-component sensor histidine kinase DesK -
  FC605_RS10455 (FC605_10455) desR 2087578..2088177 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  FC605_RS10460 (FC605_10460) walN 2088771..2089634 (-) 864 WP_080529426.1 3D domain-containing protein -
  FC605_RS10465 (FC605_10465) recQ 2089882..2091657 (-) 1776 WP_080529427.1 DNA helicase RecQ Machinery gene
  FC605_RS10475 (FC605_10475) azoJ 2092217..2092843 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  FC605_RS10480 (FC605_10480) stpP 2092994..2093485 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  FC605_RS10485 (FC605_10485) - 2093560..2093892 (-) 333 WP_003231257.1 hypothetical protein -
  FC605_RS10490 (FC605_10490) - 2093970..2094197 (+) 228 WP_004399329.1 hypothetical protein -
  FC605_RS10495 (FC605_10495) yocM 2094184..2094660 (-) 477 WP_003231255.1 salt stress-responsive protein YocM -
  FC605_RS10500 (FC605_10500) - 2094727..2094990 (+) 264 WP_004399338.1 hypothetical protein -
  FC605_RS10505 (FC605_10505) - 2094995..2095228 (+) 234 WP_003231251.1 hypothetical protein -
  FC605_RS10510 (FC605_10510) yozO 2095315..2095659 (-) 345 WP_003220141.1 PH domain-containing protein -
  FC605_RS10515 (FC605_10515) yozC 2096016..2096219 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67326.85 Da        Isoelectric Point: 6.2895

>NTDB_id=321920 FC605_RS10465 WP_080529427.1 2089882..2091657(-) (recQ) [Bacillus subtilis strain PR10]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSAEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQCVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=321920 FC605_RS10465 WP_080529427.1 2089882..2091657(-) (recQ) [Bacillus subtilis strain PR10]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCTAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
AGCTTATAAGCTTTTTTACATTACACCGGAGCGACTAACGTCCGCAGAGTTTATACGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACCGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGTCGGTATCACGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGATTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATGCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAGGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(518-583)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RQC domain (RQC)

(403-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.662

100

0.997

Multiple sequence alignment