Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   FC605_RS09150 Genome accession   NZ_CP040528
Coordinates   1751425..1751856 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain PR10     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746425..1756856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS09130 (FC605_09130) spoVS 1746986..1747246 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  FC605_RS09135 (FC605_09135) tdh 1747512..1748555 (+) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  FC605_RS09140 (FC605_09140) kbl 1748568..1749746 (+) 1179 WP_080529328.1 glycine C-acetyltransferase -
  FC605_RS09145 (FC605_09145) miaB 1749894..1751423 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  FC605_RS09150 (FC605_09150) ymcA 1751425..1751856 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  FC605_RS09155 (FC605_09155) cotE 1752110..1752655 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  FC605_RS09160 (FC605_09160) hexA 1752788..1755364 (+) 2577 WP_076457703.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=321914 FC605_RS09150 WP_003231834.1 1751425..1751856(+) (ymcA) [Bacillus subtilis strain PR10]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=321914 FC605_RS09150 WP_003231834.1 1751425..1751856(+) (ymcA) [Bacillus subtilis strain PR10]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment