Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EAF06_RS20820 Genome accession   NZ_CP033158
Coordinates   4391218..4391847 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CM IVRI KOL-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4386218..4396847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAF06_RS20800 (EAF06_21450) ycbZ 4386619..4388379 (-) 1761 WP_000152888.1 Lon protease family protein -
  EAF06_RS20805 (EAF06_21455) matP 4388565..4389017 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EAF06_RS20810 (EAF06_21460) ompA 4389093..4390133 (-) 1041 WP_000750416.1 porin OmpA -
  EAF06_RS20815 (EAF06_21465) sulA 4390490..4390999 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EAF06_RS20820 (EAF06_21470) sxy/tfoX 4391218..4391847 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EAF06_RS20825 (EAF06_21475) yccS 4391810..4393972 (-) 2163 WP_000875058.1 YccS family putative transporter -
  EAF06_RS20830 (EAF06_21480) yccF 4393982..4394428 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EAF06_RS20835 (EAF06_21485) helD 4394551..4396605 (+) 2055 WP_164529490.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=321879 EAF06_RS20820 WP_000839153.1 4391218..4391847(+) (sxy/tfoX) [Escherichia coli strain CM IVRI KOL-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=321879 EAF06_RS20820 WP_000839153.1 4391218..4391847(+) (sxy/tfoX) [Escherichia coli strain CM IVRI KOL-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment