Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FC605_RS03015 Genome accession   NZ_CP040528
Coordinates   573242..573883 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain PR10     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 568242..578883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS02985 (FC605_02985) ydfE 569438..570061 (-) 624 WP_029725823.1 flavin reductase family protein -
  FC605_RS02990 (FC605_02990) ydfF 570150..570830 (+) 681 WP_014478969.1 winged helix-turn-helix domain-containing protein -
  FC605_RS02995 (FC605_02995) ydfG 570910..571353 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  FC605_RS03000 (FC605_03000) - 571439..571618 (-) 180 WP_010886421.1 hypothetical protein -
  FC605_RS03005 (FC605_03005) - 571615..571758 (-) 144 WP_003243880.1 hypothetical protein -
  FC605_RS03010 (FC605_03010) ydfH 572026..573249 (+) 1224 WP_015252722.1 two-component system sensor histidine kinase YdfH -
  FC605_RS03015 (FC605_03015) vraR 573242..573883 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  FC605_RS03020 (FC605_03020) pleJ 573999..576173 (+) 2175 WP_080528970.1 MMPL family transporter -
  FC605_RS03025 (FC605_03025) cesA 576599..577501 (-) 903 WP_080528971.1 carboxylesterase -
  FC605_RS03030 (FC605_03030) ydfK 577704..578393 (-) 690 WP_080528972.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=321865 FC605_RS03015 WP_003244318.1 573242..573883(+) (vraR) [Bacillus subtilis strain PR10]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=321865 FC605_RS03015 WP_003244318.1 573242..573883(+) (vraR) [Bacillus subtilis strain PR10]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACACCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCTATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362