Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   FC605_RS02410 Genome accession   NZ_CP040528
Coordinates   468325..468759 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain PR10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463325..473759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC605_RS02380 (FC605_02380) ydaD 463973..464833 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  FC605_RS02385 (FC605_02385) lyxE 464849..465352 (+) 504 WP_080528933.1 D-lyxose ketol-isomerase -
  FC605_RS02390 (FC605_02390) ydaF 465439..465990 (+) 552 WP_080528934.1 GNAT family protein -
  FC605_RS02395 (FC605_02395) ydaG 466068..466490 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  FC605_RS02400 (FC605_02400) amj 466996..467805 (+) 810 WP_061891247.1 lipid II flippase Amj -
  FC605_RS02405 (FC605_02405) ydzA 467850..468140 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  FC605_RS02410 (FC605_02410) lrpC 468325..468759 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  FC605_RS02415 (FC605_02415) topB 468824..471007 (+) 2184 WP_080528935.1 DNA topoisomerase III -
  FC605_RS02420 (FC605_02420) ephJ 471210..472298 (+) 1089 WP_080528936.1 lipoprotein YdaJ -
  FC605_RS02425 (FC605_02425) epsK 472279..473130 (+) 852 WP_033883717.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=321864 FC605_RS02410 WP_003246585.1 468325..468759(+) (lrpC) [Bacillus subtilis strain PR10]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=321864 FC605_RS02410 WP_003246585.1 468325..468759(+) (lrpC) [Bacillus subtilis strain PR10]
ATGAAACTTGACCAGATTGATCTAAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment