Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   D0856_RS25795 Genome accession   NZ_CP033145
Coordinates   1607253..1608434 (+) Length   393 a.a.
NCBI ID   WP_206387590.1    Uniprot ID   -
Organism   Vibrio owensii strain V180403     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602253..1613434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS25785 (D0856_25785) - 1604589..1605575 (+) 987 WP_122070648.1 peptidoglycan DD-metalloendopeptidase family protein -
  D0856_RS25790 (D0856_25790) ylqF 1605897..1606841 (+) 945 WP_038897169.1 ribosome biogenesis GTPase YlqF -
  D0856_RS25795 (D0856_25795) cqsA 1607253..1608434 (+) 1182 WP_206387590.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  D0856_RS25800 (D0856_25800) - 1608590..1610635 (-) 2046 WP_122070654.1 hybrid sensor histidine kinase/response regulator -
  D0856_RS25805 (D0856_25805) - 1610937..1611554 (+) 618 WP_122070656.1 HAD family phosphatase -
  D0856_RS25810 (D0856_25810) - 1611622..1612170 (-) 549 WP_005437703.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44103.22 Da        Isoelectric Point: 6.1473

>NTDB_id=321855 D0856_RS25795 WP_206387590.1 1607253..1608434(+) (cqsA) [Vibrio owensii strain V180403]
MSDKLKTKRLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQPEAVVMQSNDYLSLSHNQQIQKAHRDAISEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMS
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEVIRLEKTLEVIKDADDKRTMLFNRAKELRTGLKQIGFNIRSESQ
IIALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELKFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=321855 D0856_RS25795 WP_206387590.1 1607253..1608434(+) (cqsA) [Vibrio owensii strain V180403]
ATGAGTGATAAACTGAAAACGAAACGACTTCCTTCCTTTGTTGAGGAACGCCTGGACTTTTATATTCAAGATCTGATTGA
ACAGAACGAGAACCAAAAGCACTTGGTATTAGGGAAACGACCGCAACCCGAAGCTGTGGTCATGCAGAGTAACGATTACT
TATCGCTATCTCATAACCAACAGATTCAAAAAGCTCACCGAGATGCGATATCTGAGCATGATGATAACGTCGTTATGTCT
GCGATTTTCTTGCAAGATGATGATTCGAAGCCTGCATTCGAAACGCAACTTGCGGATTACGTCGGCATGGGGAGTTGCTT
GCTTTCCCAGTCGGGATGGGCTGCGAATATAGGATTGTTGCAGACCATTTGTCCACCTGAAACGCCGGTTTATATCGACT
TCTTTGCGCATATGTCATTGTGGGAAGGTATTCGAGCCGCGGGAGCACAAGCGCATCCGTTCATGCACAACAACATGAGC
CACTTGCGTAAGCAGATCCAGCGTCATGGGTCAGGTGTTATCGTGGTAGATTCGGTCTACAGCACGATAGGCACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTAGTGGTGGATGAATCCCACTCGCTAGGGACAC
ACGGGCCTAACGGCTCCGGCTTGGTAAAAGCGCTGGAACTCACTGATCAAGTAGATTTCATTACTGTCAGTCTGGCAAAA
ACCTTTGCGTATCGAGCAGGAGCGATTCTTGGCCCAGAAAAACTGGCGCGAACGTTACCATTCGTTGCGTTCCCGGCCAT
TTTTAGTTCAACGGTTCTACCACAAGAAGTCATTCGACTAGAGAAAACGCTCGAAGTGATTAAAGACGCCGATGATAAAC
GAACCATGTTGTTCAATCGCGCTAAAGAGCTCAGAACGGGCCTTAAGCAGATTGGTTTTAATATCCGCAGCGAATCACAG
ATTATCGCGTTAGAATGCGGTAGCGAGCGTAATACCGAGCGTGTACGTGATTTCTTGGAAGAACGTAATGTCTTTGGCGC
TGTATTTTGTCGCCCGGCAACGGGAAAGAATAAAAACATTATTCGATTCTCAATCAACGCCGACATGACGTCTCGCGACA
TCGACCATGTGCTGACAGCATGTCAGGAAGCGTATAACCATCCAGAACTAAAGTTTGTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.216

98.728

0.565

Multiple sequence alignment