Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   GALLO_RS04310 Genome accession   NC_013798
Coordinates   848847..852479 (+) Length   1210 a.a.
NCBI ID   WP_012961768.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 843847..857479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS04305 (GALLO_0802) rexB 845615..848857 (+) 3243 WP_012961767.1 ATP-dependent nuclease subunit B Machinery gene
  GALLO_RS04310 (GALLO_0803) rexA 848847..852479 (+) 3633 WP_012961768.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GALLO_RS04315 (GALLO_0804) - 852584..853729 (-) 1146 WP_012961769.1 cobalamin-independent methionine synthase II family protein -
  GALLO_RS04320 (GALLO_0805) - 853936..854670 (+) 735 WP_012961770.1 PHP domain-containing protein -
  GALLO_RS04325 (GALLO_0806) - 854684..855307 (+) 624 WP_012961771.1 alpha/beta fold hydrolase -
  GALLO_RS11735 (GALLO_0807) - 855384..855560 (-) 177 WP_003064151.1 DUF3042 family protein -
  GALLO_RS04330 (GALLO_0808) miaA 855748..856635 (+) 888 WP_012961772.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -

Sequence

Protein


Download         Length: 1210 a.a.        Molecular weight: 138690.58 Da        Isoelectric Point: 4.9373

>NTDB_id=32184 GALLO_RS04310 WP_012961768.1 848847..852479(+) (rexA) [Streptococcus gallolyticus UCN34]
MIFKPFLTSEDISSLQIQEAQSSKKQKRTPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFT
VKAAGELKERIEKKISQALQETTDNDLKNYLNEQLLGLQTADIGTMDAFTQKLVNQYGYTLGISPTFRIMTEKSEQDILK
NEVFFDLFSDYMTGNDAELFRQLVRNFSGNRKDSTAFRGIVYKIYDFSQATDNPQKWLAEVFLKGAKTYTDFSAIPDQEV
TDFLTCLHDTADQLQDVTDLEDYKQKTAKGTPTANYKKHLNIIEQLREWSQHFETLYGRDGLGRLATDVAKLLPAGPAVT
VAGTKYPVFKPLQGRLTGLKHLETIFKYQPESLPLLELLQAFMQDFSEQYLQAKIQENTFEFSDITHFAIQILEENADIR
ELYQNKYHEVMVDEYQDNNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPDRGKLILLKENFR
SQSEVLDATNSIFTHLMDEAVGEILYDDTHQLVAGSPAQKESHPENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVAK
EIIRLHNEEHVAFEDITLLVSSRTRNDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLNDYALVALMRS
PMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELMTITLHVKLADFMACFAAWREFAKWHALYDLIWKIYN
DRFYYDYVGNLPRAEQRQANLYALALRANNFERTGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLE
FKYVFILNIDKKFSIQDLMSPLILSRQNGAGIKYLADMKEELETDVFPTVKVIMDTLPYQLNKRELRLATLSEQMRLFYV
AMTRAEKKLYLVGKASSEKLVDKYSGKSENNHLPVAERENFMTFQDWVLAIYEAYSKGTLPFAVDFVTDEDLTDDKIGKI
EVTSVITPDDLTDNRQSENITDALDRLEAVEKLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDVMTKAYQAQPTFEL
PDFSKKAKIEATAIGSAMHELMQRIPLSKQVTIDDITVALAQVSAENEVKARIRLENVLAFFENSELGQLIQQHTDKIYR
EAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKYKNSVEIKERYQGQMALYAEALSKSYDRKNVDKYLVLL
GGEQLEVVKL

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=32184 GALLO_RS04310 WP_012961768.1 848847..852479(+) (rexA) [Streptococcus gallolyticus UCN34]
ATGATCTTTAAACCATTTCTAACGTCAGAAGACATTTCTTCTCTACAAATCCAAGAAGCGCAGTCATCCAAAAAACAAAA
ACGTACGCCAGAACAAATCGAAGCTATTTATAGTTATGGCAATAATATTTTGGTGTCTGCATCGGCTGGTTCTGGGAAAA
CCTTTGTAATGGTTGAACGCATTATTGATAAAATTTTGCGTGGTGTGACGATTGACCAGCTATTCATTTCAACCTTCACG
GTCAAGGCTGCTGGGGAATTAAAAGAGCGTATTGAGAAGAAAATTAGCCAAGCTCTGCAAGAAACGACTGACAATGATTT
GAAAAATTATCTCAATGAGCAGTTGCTGGGCTTACAGACAGCTGATATTGGAACCATGGATGCTTTTACTCAGAAATTGG
TCAATCAATACGGCTACACGCTGGGAATTTCACCAACTTTCCGTATTATGACGGAGAAGAGTGAGCAAGATATTTTGAAA
AATGAAGTCTTTTTTGACCTTTTTTCTGATTACATGACAGGAAATGATGCTGAGCTTTTTCGTCAATTAGTGCGGAATTT
TTCTGGTAATCGTAAGGATAGCACCGCTTTTAGAGGCATTGTTTATAAAATTTATGACTTTAGTCAAGCAACTGATAATC
CACAGAAGTGGTTGGCAGAAGTATTTTTAAAAGGTGCTAAAACTTATACCGATTTTTCAGCAATTCCTGACCAAGAAGTC
ACGGATTTTCTGACTTGCTTGCATGATACGGCTGACCAGTTGCAAGATGTGACTGATTTAGAAGACTACAAGCAAAAAAC
AGCCAAAGGAACACCCACAGCCAATTATAAAAAGCATTTGAATATCATTGAGCAATTGCGTGAATGGTCACAGCATTTTG
AAACTCTTTATGGTCGTGACGGTCTTGGACGTTTGGCGACAGATGTGGCGAAATTGCTTCCAGCTGGTCCTGCTGTGACA
GTTGCAGGAACGAAATATCCCGTCTTTAAACCCTTACAGGGGCGTTTGACTGGTTTGAAACATTTGGAAACCATTTTTAA
ATACCAGCCAGAAAGCCTTCCGTTGCTAGAGCTATTGCAGGCATTTATGCAAGATTTTTCAGAGCAATATTTGCAAGCGA
AAATCCAAGAAAATACTTTTGAATTTTCGGATATTACCCATTTTGCCATTCAGATTTTGGAAGAAAACGCTGATATTCGT
GAGCTTTATCAGAATAAGTATCACGAAGTCATGGTCGATGAGTACCAAGATAATAACCACACGCAAGAACGCATGTTGGA
GTTGTTGTCGAATGGTCATAATCGATTTATGGTGGGGGATATCAAGCAATCCATTTATCGCTTCCGTCAAGCCGACCCAC
AGATTTTTAACCAAAAATTTAAAGATTTTCAAGAACATCCTGACCGTGGGAAATTAATTTTGTTAAAAGAGAATTTCCGT
AGTCAGTCAGAAGTTTTAGATGCGACAAACAGTATTTTTACGCATTTAATGGACGAGGCTGTTGGTGAGATTTTGTACGA
TGACACACATCAATTGGTCGCTGGAAGCCCTGCTCAAAAGGAAAGTCACCCAGAAAATAAAACGCAGGTGCTTATCTACG
ACATTGATAACAATAGTGACTTGCCAAGTGATGCCGAAGAAGGACAAATCAACCCTAACGAAGTCAAGTTAGTGGCTAAA
GAAATCATTCGTTTGCACAATGAGGAACACGTTGCTTTCGAGGATATTACCTTGTTGGTCTCATCACGCACGCGTAATGA
CGGTATTTTACAAACCTTTGAACACTATGGTATTCCTTTGGTGACTGACGGTGGCGAGCAAAATTACCTTAAATCAGTCG
AAGTCATGGTTATGCTTGATACGCTTCGCGCCCTTGATAATCCGCTCAATGACTATGCCTTAGTGGCACTCATGCGTTCA
CCGATGTTTTCATTCAATGAAGATGAGCTGGCACGCCTTGCGCTACAAACAACAGAAGATGACCATAGAGCTAATTTGTA
TCAAAAATTGGAGCATGCTTTAGCTGGCAAAGGAAGCCATAATGAATTGATGACAATCACTTTACATGTTAAACTGGCTG
ATTTTATGGCTTGTTTTGCTGCTTGGCGTGAATTTGCTAAATGGCATGCGCTTTATGACTTGATTTGGAAAATTTACAAC
GACAGATTTTACTATGATTACGTGGGCAATTTACCACGTGCTGAGCAACGTCAAGCAAATTTATATGCTTTGGCTCTTCG
TGCCAATAATTTTGAACGAACTGGTTTTAAAGGACTCTCACGATTTATTCGCATGATTGATAAGGTGTTAGAAAGTGAGA
ATGACCTTGCGGACGTTGAGGTGGCTCTGCCTAAAAATGCGGTGAACTTGATGACTATTCATAAAAGTAAAGGTCTCGAG
TTCAAGTATGTTTTCATTTTGAATATTGACAAGAAATTTAGTATTCAGGATTTGATGTCACCCTTGATTTTATCACGTCA
AAATGGTGCAGGTATCAAGTACCTAGCTGATATGAAAGAAGAGTTGGAAACGGACGTTTTCCCAACAGTCAAGGTTATCA
TGGATACCTTGCCTTACCAGCTCAATAAGCGTGAATTGCGCTTAGCTACGCTTTCAGAACAAATGCGATTGTTTTACGTT
GCCATGACCCGCGCAGAAAAAAAATTGTATTTGGTCGGAAAAGCAAGCTCCGAAAAGTTAGTGGATAAATATAGCGGTAA
ATCAGAAAACAATCATTTGCCAGTGGCAGAACGTGAGAATTTCATGACCTTTCAAGATTGGGTGTTAGCCATTTATGAGG
CTTATAGCAAGGGGACCTTGCCTTTTGCCGTTGATTTTGTCACGGACGAAGATTTGACAGATGATAAGATTGGTAAAATT
GAAGTCACTTCTGTGATAACGCCAGATGATTTGACAGATAACCGCCAGTCTGAAAATATCACGGATGCCTTGGATAGATT
AGAAGCTGTTGAAAAGTTAAATGCGAAGTACCACGCAGCCATCAATTTGCCAAGTCTGAGAACGCCAAGTCAGGTCAAAA
AACTCTATGAGCCAGTCATGGATACTGATGGTGTTGACGTGATGACAAAAGCCTATCAAGCACAACCAACATTTGAATTG
CCAGATTTTTCGAAGAAAGCCAAAATCGAAGCGACAGCCATTGGTTCGGCAATGCATGAACTCATGCAACGTATTCCTCT
ATCAAAACAGGTGACGATAGACGATATTACCGTGGCTTTAGCCCAAGTTTCGGCAGAAAATGAGGTGAAAGCACGTATTC
GTTTGGAAAATGTCCTAGCCTTTTTTGAAAATTCAGAGCTCGGTCAGTTGATTCAGCAACATACGGACAAGATTTATCGC
GAAGCACCTTTTGCCATGTTAAAAGAGGACCCTGACAGTAAGGAAAAATTCGTTGTCCGTGGGATTGTCGATGGTTACCT
TGTCTTAGATGACCGCATCGTACTCTTTGATTATAAGACTGATAAATACAAAAATAGCGTGGAAATCAAGGAACGCTACC
AAGGACAAATGGCTTTATATGCAGAAGCTCTCAGCAAGTCTTACGATAGAAAAAACGTTGATAAATACCTCGTCTTGCTT
GGTGGCGAACAGCTAGAAGTTGTTAAACTATAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-892)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1032-1189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.512

100

0.536

Multiple sequence alignment