Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D0856_RS08360 Genome accession   NZ_CP033144
Coordinates   1683955..1685376 (+) Length   473 a.a.
NCBI ID   WP_122067698.1    Uniprot ID   -
Organism   Vibrio owensii strain V180403     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1678955..1690376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS08340 (D0856_08340) - 1679336..1679947 (-) 612 WP_122067696.1 flavin reductase family protein -
  D0856_RS08345 (D0856_08345) - 1680624..1681319 (+) 696 WP_122067697.1 NAD(P)H-binding protein -
  D0856_RS08350 (D0856_08350) - 1681512..1682885 (+) 1374 WP_020194842.1 L-cystine transporter -
  D0856_RS08355 (D0856_08355) - 1683112..1683792 (+) 681 WP_005439822.1 DUF1826 domain-containing protein -
  D0856_RS08360 (D0856_08360) sbcB 1683955..1685376 (+) 1422 WP_122067698.1 exodeoxyribonuclease I Machinery gene
  D0856_RS08365 (D0856_08365) - 1685435..1685809 (+) 375 WP_122067699.1 CidA/LrgA family protein -
  D0856_RS08370 (D0856_08370) - 1685811..1686487 (+) 677 Protein_1545 LrgB family protein -
  D0856_RS08375 (D0856_08375) cdd 1686753..1687639 (+) 887 Protein_1546 cytidine deaminase -
  D0856_RS08380 (D0856_08380) - 1687688..1688386 (-) 699 WP_009705895.1 hypothetical protein -
  D0856_RS08385 (D0856_08385) purT 1688594..1689769 (+) 1176 WP_122067700.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54629.90 Da        Isoelectric Point: 4.8831

>NTDB_id=321824 D0856_RS08360 WP_122067698.1 1683955..1685376(+) (sbcB) [Vibrio owensii strain V180403]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVENGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKREELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYTGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=321824 D0856_RS08360 WP_122067698.1 1683955..1685376(+) (sbcB) [Vibrio owensii strain V180403]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAGTTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTATCTCCCTTCGCCAGAAGCTGCTTTGATCACTGGTATTACGCCACAAAAAGCCATGCAAGAAGGCCTACCTGAACCT
GAGTTTATCGCCAAGATCCACGCTGAGCTTTCTAAACCAAACACAACGAGCCTTGGTTACAACAGCATCCGTTTCGATGA
TGAAGTCACTCGTTACACTTGTTACCGCAACTTTATCGACCCGTATGCGTGGAGCTGGCAAAACGGTAACTCGCGCTGGG
ATTTGCTCGATGTGATGCGAGCGTGTCATGCCCTTCGTCCTGAGGGCGTGGAATGGCCAGAGAATGATGAAGGCTTTACG
AGTTTCAAGCTTGAGCATTTATCTGTGGAAAATGGCATTGAACACAGCAATGCCCACGATGCGATGGCAGATGTAATTGC
TACTATTGAGATGGCGAAGAAAGTCAAAGCCGCGCAACCAAAGCTGTTTGATTACTTTTACTCGATGCGTAACAAGCGCA
AACTGAACGAGTTAGTCGATATTGTAAACATGACGCCATTGATGCACGTATCAGGCATGTTGGGACGTGAGTGCCAATAC
ACAAGCTGGATTGTTCCTGTGGCTTGGCATCCAACCAACAATAACGCCGTCATCACAATTGATTTAGCCAAAGATCCTCA
GCCTATTCTTGAGCTTTCAGCAGAAGAGTTGAAAGAGCGTTTGTACACCAAGCGTGAAGAACTGGGTGACTTATTGCCTG
TACCCGTAAAGCTCGTACATCTGAACAAGTGCCCTATCCTTGCTCCAGCTAAAACGTTAACGGCAGAGAACGCAGAAGTA
ATTGGAATCGACCGTCAGAAATGTTTGAGTAATCTAGCACTGCTGCGTCAACACCCAGAAATCCGTGAGAAGCTAATTAG
TCTATTCTCTATTGAGCGTGAGTTCGAAAAGAGCGATGATGTGGATACGCAACTGTACGATGGCTTCTTTTCACCAGCAG
ATCGCGCGGCGATGGACATCATTCGTGAAACAGATCCAAATAACCTTGCTGCGCTGGACATTGAGTTTGATGACAAACGC
ATCAAGCCGTTGCTATTCCGTTACCGTGCCCGTCACTACACAGGCACACTGGATGAACAAGAACAAAGACGTTGGGCACA
ACACTGTCGTGAAGTTTTCGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCGATACTAAAATCCGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment