Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D0856_RS00315 Genome accession   NZ_CP033144
Coordinates   56818..57336 (+) Length   172 a.a.
NCBI ID   WP_005438047.1    Uniprot ID   A0A812FIS6
Organism   Vibrio owensii strain V180403     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 51818..62336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS00305 (D0856_00305) gshA 54533..56101 (+) 1569 WP_122067013.1 glutamate--cysteine ligase -
  D0856_RS00310 (D0856_00310) - 56163..56726 (+) 564 WP_012128887.1 hypothetical protein -
  D0856_RS00315 (D0856_00315) luxS 56818..57336 (+) 519 WP_005438047.1 S-ribosylhomocysteine lyase Regulator
  D0856_RS00320 (D0856_00320) - 57423..58703 (-) 1281 WP_009707575.1 CNNM domain-containing protein -
  D0856_RS00325 (D0856_00325) - 58858..59652 (-) 795 WP_005438043.1 inner membrane protein YpjD -
  D0856_RS00330 (D0856_00330) ffh 59866..61254 (+) 1389 WP_005438041.1 signal recognition particle protein -
  D0856_RS00335 (D0856_00335) rpsP 61465..61713 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  D0856_RS00340 (D0856_00340) rimM 61744..62292 (+) 549 WP_005438038.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19116.87 Da        Isoelectric Point: 4.7373

>NTDB_id=321816 D0856_RS00315 WP_005438047.1 56818..57336(+) (luxS) [Vibrio owensii strain V180403]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=321816 D0856_RS00315 WP_005438047.1 56818..57336(+) (luxS) [Vibrio owensii strain V180403]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGCATGAATGCACCAGCAGTCCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGGGACACCATCACGGTATTCGACCTACGTTTCACTGCGCCAAACAAAGACATCCTTTCTGAGAAAGGGATTC
ATACATTAGAACACTTGTACGCAGGCTTTATGCGTAACCACTTAAATGGTGAGAGTGTTGAGATCATTGATATTTCACCA
ATGGGCTGTCGCACTGGTTTCTACATGAGTTTGATTGGCACGCCTTCAGAGCAACAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGATGTTTTGAAAGTAGAAAACCAAAATAAGATTCCTGAGTTGAACGAATACCAATGTGGTACAGCAGCAATGC
ACTCTCTGGATGAAGCAAAGCAAATCGCGAAGAACATTCTAGAAGCTGGTGTATCAGTCAATAAGAATGACGAGCTTGCG
CTGCCAGAGTCAATGCTAAAAGAACTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FIS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment