Detailed information NTG0321814

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D0856_RS00155
• Genome accession: NZ_CP033144
• Coordinates: 28976..29959 (+)
• Length: 327 a.a.
• NCBI ID: WP_122067006.1
• Uniprot ID: -
• Organism: Vibrio owensii strain V180403
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 23976..34959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0856_RS00120 (D0856_00120)	ftsB	23986..24267 (+)	282	WP_005436434.1	cell division protein FtsB	-
D0856_RS00125 (D0856_00125)	ispD	24269..24976 (+)	708	WP_122068831.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D0856_RS00130 (D0856_00130)	ispF	24991..25467 (+)	477	WP_009707591.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D0856_RS00135 (D0856_00135)	truD	25513..26556 (+)	1044	WP_122067005.1	tRNA pseudouridine(13) synthase TruD	-
D0856_RS00140 (D0856_00140)	surE	26556..27332 (+)	777	WP_005436425.1	5'/3'-nucleotidase SurE	-
D0856_RS00145 (D0856_00145)	-	27332..27958 (+)	627	WP_005436423.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
D0856_RS00150 (D0856_00150)	-	27973..28895 (+)	923	Protein_27	peptidoglycan DD-metalloendopeptidase family protein	-
D0856_RS00155 (D0856_00155)	rpoS	28976..29959 (+)	984	WP_122067006.1	RNA polymerase sigma factor RpoS	Regulator
D0856_RS00160 (D0856_00160)	mutS	30052..32612 (-)	2561	Protein_29	DNA mismatch repair protein MutS	-
D0856_RS00165 (D0856_00165)	pncC	32698..33180 (+)	483	WP_009707585.1	nicotinamide-nucleotide amidase	-
D0856_RS00170 (D0856_00170)	recA	33381..34424 (+)	1044	WP_005425359.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37193.03 Da
• Isoelectric Point: 4.7200

>NTDB_id=321814 D0856_RS00155 WP_122067006.1 28976..29959(+) (rpoS) [Vibrio owensii strain V180403]
MSISNTVTKVEEFDYDNAQSEGISNEPAKPSTGTKSAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=321814 D0856_RS00155 WP_122067006.1 28976..29959(+) (rpoS) [Vibrio owensii strain V180403]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGACTACGATAATGCACAATCGGAAGGCATTTCAAACGAACC
TGCAAAACCATCTACTGGAACCAAATCAGCGGCGCGCGAAGAATTTGACGCGAGCAGTAAGAGCTTAGACGCAACTCAGC
TCTACTTAGGCGAAATTGGTTTCTCACCACTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGTGGC
GATGAAGCCGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTCGTAGTAAAGATCTCTCGTCGATACAGCAACCGTGG
TCTCGCACTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAACGCGGTT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTAGACCATGAACC
AACAGCAGAAGAGATCGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTACGCCTCAACGAGCGTATCA
GTTCTGTTGACACACCAATCGGTGGTGACGGCGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAATAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GTTGGCACGTCGTTTTGGTTTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTCTAACACGCG
AACGTGTTCGTCAGATCCAAGTGGAAGGTTTGCGTCGACTACGCGAGATCTTGATTAAGCAAGGTCTAAACATGGAAAAC
CTGTTTAACGTGGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.859