Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FE252_RS20000 Genome accession   NZ_CP040456
Coordinates   3746927..3747532 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain UPEC132     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3741927..3752532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE252_RS19980 aes 3742081..3743049 (+) 969 WP_000801824.1 acetyl esterase -
  FE252_RS19985 hemH 3743024..3743986 (-) 963 WP_001250114.1 ferrochelatase -
  FE252_RS19990 adk 3744118..3744762 (-) 645 WP_001220233.1 adenylate kinase -
  FE252_RS19995 htpG 3744943..3746817 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FE252_RS20000 recR 3746927..3747532 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FE252_RS20005 ybaB 3747532..3747861 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FE252_RS20010 dnaX 3747914..3749845 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  FE252_RS20015 apt 3749974..3750525 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FE252_RS20020 ybaN 3750678..3751055 (-) 378 WP_001188900.1 DUF454 family protein -
  FE252_RS20025 priC 3751125..3751652 (+) 528 WP_000844868.1 primosomal replication protein N'' -
  FE252_RS20030 rsmS 3751666..3751827 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  FE252_RS27940 - 3751880..3751978 (-) 99 Protein_3579 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=321810 FE252_RS20000 WP_001195025.1 3746927..3747532(-) (recR) [Escherichia coli strain UPEC132]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=321810 FE252_RS20000 WP_001195025.1 3746927..3747532(-) (recR) [Escherichia coli strain UPEC132]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443