Detailed information NTG0321803

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: D0871_RS15995
• Genome accession: NZ_CP033141
• Coordinates: 3184852..3185859 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 160807
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3179852..3190859

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0871_RS15970 (D0871_15970)	rplC	3180386..3181015 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
D0871_RS15975 (D0871_15975)	rpsJ	3181030..3181341 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
D0871_RS15980 (D0871_15980)	rpmE	3181799..3182020 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
D0871_RS15990 (D0871_15990)	priA	3182315..3184519 (+)	2205	WP_122016050.1	primosomal protein N'	-
D0871_RS15995 (D0871_15995)	cytR	3184852..3185859 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
D0871_RS16000 (D0871_16000)	ftsN	3186035..3186580 (+)	546	WP_005481405.1	cell division protein FtsN	-
D0871_RS16005 (D0871_16005)	hslV	3186745..3187296 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
D0871_RS16010 (D0871_16010)	hslU	3187320..3188651 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
D0871_RS16015 (D0871_16015)	-	3189076..3189300 (-)	225	WP_029864913.1	hypothetical protein	-
D0871_RS16020 (D0871_16020)	-	3189488..3189610 (-)	123	WP_122016051.1	AlpA family phage regulatory protein	-
D0871_RS16025 (D0871_16025)	radC	3189781..3190254 (+)	474	WP_023624904.1	DNA repair protein RadC	-
D0871_RS16030 (D0871_16030)	-	3190251..3190682 (+)	432	WP_029864910.1	DUF2787 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=321803 D0871_RS15995 WP_005481416.1 3184852..3185859(+) (cytR) [Vibrio parahaemolyticus strain 160807]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=321803 D0871_RS15995 WP_005481416.1 3184852..3185859(+) (cytR) [Vibrio parahaemolyticus strain 160807]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCAGCTATGGAACATGGCTACCTAGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTGAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904