Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D0871_RS10565 Genome accession   NZ_CP033141
Coordinates   2062266..2063687 (+) Length   473 a.a.
NCBI ID   WP_023623951.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2057266..2068687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS10545 (D0871_10545) - 2057325..2058077 (-) 753 WP_031857920.1 adenosylcobinamide-GDP ribazoletransferase -
  D0871_RS10550 (D0871_10550) cobT 2058122..2059165 (-) 1044 WP_023623948.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  D0871_RS10555 (D0871_10555) - 2059849..2060544 (+) 696 WP_023623949.1 NAD(P)H-binding protein -
  D0871_RS10560 (D0871_10560) - 2060737..2062110 (+) 1374 WP_023623950.1 L-cystine transporter -
  D0871_RS10565 (D0871_10565) sbcB 2062266..2063687 (+) 1422 WP_023623951.1 exodeoxyribonuclease I Machinery gene
  D0871_RS10570 (D0871_10570) - 2063743..2064117 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  D0871_RS10575 (D0871_10575) - 2064119..2064796 (+) 678 WP_005454891.1 LrgB family protein -
  D0871_RS10580 (D0871_10580) cdd 2065161..2066048 (+) 888 WP_015296604.1 cytidine deaminase -
  D0871_RS10585 (D0871_10585) purT 2066196..2067371 (+) 1176 WP_023584297.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  D0871_RS10590 (D0871_10590) - 2067473..2068123 (-) 651 WP_023623952.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54615.01 Da        Isoelectric Point: 5.1101

>NTDB_id=321793 D0871_RS10565 WP_023623951.1 2062266..2063687(+) (sbcB) [Vibrio parahaemolyticus strain 160807]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPKGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=321793 D0871_RS10565 WP_023623951.1 2062266..2063687(+) (sbcB) [Vibrio parahaemolyticus strain 160807]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCAATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGATCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTAAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAGCTGTTTGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCATGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment