Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D0871_RS03385 Genome accession   NZ_CP033141
Coordinates   641129..641647 (+) Length   172 a.a.
NCBI ID   WP_023624250.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 636129..646647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS03375 (D0871_03375) gshA 638864..640432 (+) 1569 WP_023624248.1 glutamate--cysteine ligase -
  D0871_RS03380 (D0871_03380) - 640457..641062 (+) 606 WP_023624249.1 hypothetical protein -
  D0871_RS03385 (D0871_03385) luxS 641129..641647 (+) 519 WP_023624250.1 S-ribosylhomocysteine lyase Regulator
  D0871_RS03390 (D0871_03390) - 641709..642989 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  D0871_RS03395 (D0871_03395) - 643115..643909 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  D0871_RS03400 (D0871_03400) ffh 644122..645504 (+) 1383 WP_005462555.1 signal recognition particle protein -
  D0871_RS03405 (D0871_03405) rpsP 645714..645962 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  D0871_RS03410 (D0871_03410) rimM 645991..646539 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19102.84 Da        Isoelectric Point: 4.8520

>NTDB_id=321784 D0871_RS03385 WP_023624250.1 641129..641647(+) (luxS) [Vibrio parahaemolyticus strain 160807]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDRVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=321784 D0871_RS03385 WP_023624250.1 641129..641647(+) (luxS) [Vibrio parahaemolyticus strain 160807]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACCGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment