Detailed information NTG0321778

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FE252_RS07680
• Genome accession: NZ_CP040456
• Coordinates: 1255778..1256770 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain UPEC132
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1250778..1261770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FE252_RS07650	ispD	1250839..1251549 (+)	711	WP_000246148.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FE252_RS07655	ispF	1251549..1252028 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FE252_RS07660	truD	1252025..1253074 (+)	1050	WP_000568959.1	tRNA pseudouridine(13) synthase TruD	-
FE252_RS07665	surE	1253055..1253816 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FE252_RS07670	pcm	1253810..1254436 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FE252_RS07675	nlpD	1254621..1255715 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
FE252_RS07680	rpoS	1255778..1256770 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FE252_RS07685	-	1256948..1257499 (-)	552	WP_001179442.1	flavodoxin family protein	-
FE252_RS07690	-	1257724..1258767 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
FE252_RS07695	ygbN	1258910..1260274 (-)	1365	WP_000104433.1	GntP family transporter	-
FE252_RS07700	ygbM	1260363..1261139 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=321778 FE252_RS07680 WP_000081550.1 1255778..1256770(+) (rpoS) [Escherichia coli strain UPEC132]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=321778 FE252_RS07680 WP_000081550.1 1255778..1256770(+) (rpoS) [Escherichia coli strain UPEC132]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715