Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   D0812_RS23645 Genome accession   NZ_CP033138
Coordinates   1320632..1321933 (+) Length   433 a.a.
NCBI ID   WP_081009362.1    Uniprot ID   -
Organism   Vibrio owensii strain 1700302     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315632..1326933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0812_RS23635 (D0812_23635) - 1318090..1319076 (+) 987 WP_054824687.1 peptidoglycan DD-metalloendopeptidase family protein -
  D0812_RS23640 (D0812_23640) ylqF 1319398..1320342 (+) 945 WP_009704187.1 ribosome biogenesis GTPase YlqF -
  D0812_RS23645 (D0812_23645) cqsA 1320632..1321933 (+) 1302 WP_081009362.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  D0812_RS23650 (D0812_23650) - 1322089..1324134 (-) 2046 WP_054824685.1 hybrid sensor histidine kinase/response regulator -
  D0812_RS23655 (D0812_23655) - 1324438..1325055 (+) 618 WP_033005631.1 HAD family phosphatase -
  D0812_RS23660 (D0812_23660) - 1325123..1325671 (-) 549 WP_005437703.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48748.66 Da        Isoelectric Point: 6.3400

>NTDB_id=321765 D0812_RS23645 WP_081009362.1 1320632..1321933(+) (cqsA) [Vibrio owensii strain 1700302]
MPSLQAHANLCNLANDTSLILVKLYNCQRWRFSVLRRELIMSDKLKTKRLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQPEAVVMQSNDYLSLSHNQQIQKAHRDAISEHDDNVVMSAIFLQDDDSKPAFETQLADYVGMGSCLLSQSGFAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMSHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEVIRL
EKTLEVIKDADDKRTMLFNRAKELRTGLKQIGFNIRSESQIIALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFV

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=321765 D0812_RS23645 WP_081009362.1 1320632..1321933(+) (cqsA) [Vibrio owensii strain 1700302]
ATGCCGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGGCTAATGACACCTCACTCATATTAGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTTCTGTATTACGAAGAGAACTTATTATGAGTGATAAACTGAAAACGAAACGACTTCCTTCCTTTG
TTGAGGAACGCCTGGACTTTTATATTCAAGATCTGATTGAACAGAACGAGAACCAAAAGCACTTGGTATTAGGGAAACGA
CCGCAACCCGAAGCTGTGGTCATGCAGAGTAACGATTACTTATCGCTATCTCATAACCAACAGATTCAAAAAGCTCACCG
AGATGCGATATCTGAGCATGATGATAACGTCGTTATGTCTGCGATTTTCTTGCAAGATGATGATTCGAAGCCTGCATTTG
AAACGCAACTTGCGGATTACGTCGGCATGGGGAGTTGCTTGCTTTCCCAGTCGGGATTTGCTGCGAATATAGGATTGTTG
CAGACCATTTGTCCGCCTGAAACGCCGGTTTATATCGACTTCTTTGCGCATATGTCATTGTGGGAAGGTATTCGGGCCGC
GGGAGCACAAGCGCATCCGTTCATGCACAACAACATGAGCCACTTGCGTAAGCAGATCCAGCGTCATGGCTCAGGCGTTA
TCGTGGTAGATTCGGTCTACAGCACGATAGGCACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTAGTGGTGGATGAATCCCACTCGTTAGGAACACACGGGCCTAACGGCTCTGGCTTGGTAAAAGCGTTGGAACT
CACTGATCAAGTAGATTTCATTACTGTCAGTCTGGCAAAAACCTTTGCTTATCGAGCAGGAGCGATTCTCGGCCCAGAAA
AACTGGCGCGAACGTTACCATTTGTTGCGTTCCCGGCCATTTTTAGTTCAACGGTTCTGCCACAAGAAGTCATTCGGCTA
GAGAAAACGCTCGAAGTGATTAAAGACGCCGATGATAAACGAACCATGCTGTTCAATCGCGCTAAAGAGCTCAGAACGGG
CCTTAAGCAGATTGGTTTTAATATCCGCAGCGAATCACAAATTATCGCGTTAGAGTGCGGTAGCGAGCGTAATACCGAGC
GAGTACGTGACTTCTTGGAAGAACGTAATGTCTTTGGCGCTGTATTTTGTCGCCCGGCAACGGGAAAGAATAAAAACATT
ATTCGATTCTCAATCAACGCCGACATGACGTCTCGCGACATCGACCATGTGCTGACCGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAGTTTGTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(86-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.959

89.607

0.51

Multiple sequence alignment