Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D0812_RS11190 Genome accession   NZ_CP033137
Coordinates   2349057..2350478 (-) Length   473 a.a.
NCBI ID   WP_054822648.1    Uniprot ID   A0AAP9KA88
Organism   Vibrio owensii strain 1700302     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2344057..2355478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0812_RS11165 (D0812_11165) purT 2344664..2345839 (-) 1176 WP_054822650.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  D0812_RS11170 (D0812_11170) - 2346047..2346745 (+) 699 WP_009705895.1 hypothetical protein -
  D0812_RS11175 (D0812_11175) cdd 2346792..2347679 (-) 888 WP_005439818.1 cytidine deaminase -
  D0812_RS11180 (D0812_11180) - 2347945..2348622 (-) 678 WP_009705896.1 LrgB family protein -
  D0812_RS11185 (D0812_11185) - 2348624..2348998 (-) 375 WP_054822649.1 CidA/LrgA family protein -
  D0812_RS11190 (D0812_11190) sbcB 2349057..2350478 (-) 1422 WP_054822648.1 exodeoxyribonuclease I Machinery gene
  D0812_RS11195 (D0812_11195) - 2350641..2351321 (-) 681 WP_054822647.1 DUF1826 domain-containing protein -
  D0812_RS11200 (D0812_11200) - 2351547..2352920 (-) 1374 WP_054822646.1 L-cystine transporter -
  D0812_RS11205 (D0812_11205) - 2353113..2353808 (-) 696 WP_054822645.1 NAD(P)H-binding protein -
  D0812_RS11210 (D0812_11210) - 2354484..2355095 (+) 612 WP_054822644.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54545.84 Da        Isoelectric Point: 4.9293

>NTDB_id=321753 D0812_RS11190 WP_054822648.1 2349057..2350478(-) (sbcB) [Vibrio owensii strain 1700302]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKGAQPKLFDYFYSMRNKRKLNELVDIVNMTPLMHVSGMMGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKREELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=321753 D0812_RS11190 WP_054822648.1 2349057..2350478(-) (sbcB) [Vibrio owensii strain 1700302]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCACCTGCTG
ATTATCTCCCTTCACCAGAAGCTGCTTTGATCACTGGCATTACGCCACAAAAAGCCATGCAAGAAGGCCTACCTGAGCCA
GAGTTTATCGCTAAGATCCACGCCGAGCTTTCTAAACCAAACACAACGAGCCTTGGTTACAACAGCATCCGTTTCGATGA
TGAAGTCACACGTTACACTTGTTACCGCAACTTTATCGACCCATATGCGTGGAGCTGGCAAAACGGTAACTCGCGCTGGG
ATTTGCTCGATGTGATGCGAGCGTGTCATGCCCTTCGTCCTGAAGGTGTGGAATGGCCAGAGAATGATGAAGGCTTTACG
AGTTTCAAGCTTGAGCATTTATCCGTGGCTAACGGCATTGAGCACAGCAATGCTCACGATGCGATGGCAGATGTAATTGC
TACTATTGAGATGGCGAAGAAAGTCAAAGGCGCGCAACCAAAGCTGTTTGATTACTTTTACTCGATGCGTAACAAGCGCA
AGCTGAACGAGTTAGTCGATATTGTAAACATGACGCCATTGATGCACGTGTCAGGCATGATGGGACGTGAGTGCCAATAC
ACAAGCTGGATTGTGCCAGTGGCTTGGCATCCAACCAACAACAACGCCGTCATCACGATTGATTTAGCCAAAGATCCTCA
ACCGATCCTTGAGCTTTCAGCAGAAGAGTTAAAAGAGCGTTTGTACACCAAACGTGAAGAACTGGGTGACTTACTGCCTG
TACCCGTAAAGCTCGTGCATCTGAACAAGTGCCCTATTCTTGCTCCAGCTAAAACGTTAACGGCAGAGAACGCAGAAGTA
ATCGGAATCGACCGTCAGAAATGTTTGAGTAATCTAGCACTGCTGCGTCAACACCCAGAAATCCGTGAGAAGCTAATTAG
TCTATTCTCTATTGAGCGTGAGTTCGAAAAGAGCGATGATGTGGATACGCAACTGTACGATGGCTTCTTTTCACCAGCAG
ATCGCGCGGCGATGGACATCATTCGTGAAACAGATCCAAATAACCTTGCTGCGCTGGACATTGAGTTTGATGACAAACGC
ATCAAGCCGTTGCTATTCCGTTACCGTGCCCGTCACTACGCGGGCACACTGGATGAACAAGAACAAAGACGTTGGGCACA
ACACTGTCGCGAAGTTTTCGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCGATACTAAAATCCGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment