Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   D0812_RS05570 Genome accession   NZ_CP033137
Coordinates   1169358..1170761 (+) Length   467 a.a.
NCBI ID   WP_054824059.1    Uniprot ID   -
Organism   Vibrio owensii strain 1700302     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1164358..1175761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0812_RS05565 (D0812_05565) uvrB 1167002..1169032 (+) 2031 WP_005439672.1 excinuclease ABC subunit UvrB -
  D0812_RS05570 (D0812_05570) luxO 1169358..1170761 (+) 1404 WP_054824059.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  D0812_RS05575 (D0812_05575) luxU 1170758..1171102 (+) 345 WP_009707282.1 quorum-sensing phosphorelay protein LuxU -
  D0812_RS05580 (D0812_05580) - 1171200..1172093 (-) 894 WP_005439666.1 YvcK family protein -
  D0812_RS05585 (D0812_05585) moaA 1172391..1173380 (+) 990 WP_005439665.1 GTP 3',8-cyclase MoaA -
  D0812_RS05590 (D0812_05590) moaB 1173482..1173994 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  D0812_RS05595 (D0812_05595) moaC 1174021..1174497 (+) 477 WP_005439664.1 cyclic pyranopterin monophosphate synthase MoaC -
  D0812_RS05600 (D0812_05600) moaD 1174497..1174754 (+) 258 WP_009707280.1 molybdopterin synthase sulfur carrier subunit -
  D0812_RS05605 (D0812_05605) moaE 1174756..1175211 (+) 456 WP_009707279.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52206.74 Da        Isoelectric Point: 5.7183

>NTDB_id=321744 D0812_RS05570 WP_054824059.1 1169358..1170761(+) (luxO) [Vibrio owensii strain 1700302]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSY
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
ISKFIEPEIMTVSDIMPLWMTEKMAIEQAIQACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=321744 D0812_RS05570 WP_054824059.1 1169358..1170761(+) (luxO) [Vibrio owensii strain 1700302]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCATTGTACCG
TTCTTACCTGACGCCTCTCGGCATCGATATTAATATTGTTGGAACAGGCAGAGACGCCATCGAAAGCCTGAACCATCGAA
TTCCCGATCTGATTCTGCTCGATCTCCGCTTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCTAC
CCAGACGTGCCAATCATCTTTATGACTGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGTTCTCAAGA
CTTCTTAATCAAACCATGTGAAGCCGACCGTCTCCGTGTCACGGTGAACAACGCAATTCGCAAAGCAACCAAGCTTAAGA
ATGAAGCGGATAACCCGGGTAACCAAAATTACCAAGGTTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGAACC
ATTGACTCCGCTGCGAGCAGTAAAGCGAGTATTTTCATCACAGGTGAAAGTGGTACCGGTAAAGAGGTGTGTGCCGAAGC
TATTCACGCAGCAAGCAAACGTGGCGATAAGCCGTTTATCGCTATTAACTGTGCTGCGATCCCGAAAGATCTGATTGAAA
GTGAATTGTTTGGTCACGTAAAAGGCGCGTTTACCGGTGCTGCGAATGATCGTCAAGGTGCGGCTGAGCTTGCCGATGGT
GGCACGCTGTTCCTTGATGAATTGTGTGAAATGGACTTAGATCTTCAAACTAAGTTATTGCGCTTTATCCAAACGGGTAC
TTTCCAAAAAGTGGGCTCTTCAAAGATGAAGAGTGTCGACGTGCGATTCGTATGTGCGACCAACCGCGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTACTACCGTTTGTACGTGATTCCTTTGCACCTTCCACCGTTGCGTGAG
CGCGGCGAAGACGTGATTGAAATTGCGTATTCGCTACTGGGTTATATGTCTCACGAGGAAGGCAAGAGTTTTATCCGTTT
TGCACAAGATGTGATTGAACGTTTCAACAGTTACGAATGGCCGGGTAACGTTCGTCAGTTGCAAAACGTACTGCGTAATA
TTGTGGTACTGAACAACGGCAAAGAAATTACGTTGGACATGCTGCCACCACCACTGAATCAACCGGTGGTTCGTCAATCG
ATTTCAAAATTTATTGAACCTGAAATCATGACGGTGTCAGACATTATGCCGCTTTGGATGACTGAAAAAATGGCCATCGA
GCAGGCGATTCAGGCGTGTGACGGCAACATTCCACGCGCTGCGGGCTATCTAGATGTCAGCCCATCGACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAGAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829

Multiple sequence alignment