Detailed information NTG0321734

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D0812_RS02840
• Genome accession: NZ_CP033137
• Coordinates: 566305..567288 (+)
• Length: 327 a.a.
• NCBI ID: WP_054824010.1
• Uniprot ID: A0AAP9G9L8
• Organism: Vibrio owensii strain 1700302
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 561305..572288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0812_RS02805 (D0812_02805)	ftsB	561314..561595 (+)	282	WP_005436434.1	cell division protein FtsB	-
D0812_RS02810 (D0812_02810)	ispD	561597..562304 (+)	708	WP_054824031.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D0812_RS02815 (D0812_02815)	ispF	562319..562795 (+)	477	WP_009707591.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D0812_RS02820 (D0812_02820)	truD	562841..563884 (+)	1044	WP_054824011.1	tRNA pseudouridine(13) synthase TruD	-
D0812_RS02825 (D0812_02825)	surE	563884..564660 (+)	777	WP_005436425.1	5'/3'-nucleotidase SurE	-
D0812_RS02830 (D0812_02830)	-	564660..565286 (+)	627	WP_020196177.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
D0812_RS02835 (D0812_02835)	-	565301..566224 (+)	924	WP_005436421.1	peptidoglycan DD-metalloendopeptidase family protein	-
D0812_RS02840 (D0812_02840)	rpoS	566305..567288 (+)	984	WP_054824010.1	RNA polymerase sigma factor RpoS	Regulator
D0812_RS02845 (D0812_02845)	mutS	567377..569938 (-)	2562	WP_054824009.1	DNA mismatch repair protein MutS	-
D0812_RS02850 (D0812_02850)	pncC	570024..570506 (+)	483	WP_009707585.1	nicotinamide-nucleotide amidase	-
D0812_RS02855 (D0812_02855)	recA	570707..571750 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37181.02 Da
• Isoelectric Point: 4.7200

>NTDB_id=321734 D0812_RS02840 WP_054824010.1 566305..567288(+) (rpoS) [Vibrio owensii strain 1700302]
MSISNTVTKVEEFDYDNAQSEGIANEPAKTSTGTKSAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=321734 D0812_RS02840 WP_054824010.1 566305..567288(+) (rpoS) [Vibrio owensii strain 1700302]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGACTACGATAATGCACAATCGGAAGGCATTGCAAACGAACC
TGCAAAAACATCTACTGGAACCAAATCAGCGGCGCGCGAAGAATTTGACGCGAGCAGTAAGAGCTTAGACGCTACACAGC
TCTACTTGGGCGAAATTGGTTTCTCACCACTACTTACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGTGGC
GATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCGTGG
CCTCGCACTTCTTGATCTCATCGAGGAAGGCAACCTAGGTTTGATCCGTGCGGTCGAAAAGTTCGATCCAGAACGCGGTT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATCGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTCAACGAGCGTATCA
GTTCAGTTGACACACCAATCGGTGGTGACGGCGAGAAAGCGCTACTGGATATCATTCCTGATGCAAACAACTCGGATCCT
GAGGTCTCTACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTCGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATCGGACTAACGCGTG
AACGTGTTCGTCAGATCCAAGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATTAAGCAAGGTTTAAACATGGAAAAC
CTGTTTAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.859