Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | FE003_RS10700 | Genome accession | NZ_CP040425 |
| Coordinates | 2203803..2204183 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | A0ABX6CGB7 |
| Organism | Acinetobacter baumannii strain PB364 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2198803..2209183
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE003_RS10670 (FE003_10670) | tadA | 2198921..2199424 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| FE003_RS10675 (FE003_10675) | - | 2199431..2200555 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| FE003_RS10680 (FE003_10680) | ung | 2200552..2201265 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| FE003_RS10685 (FE003_10685) | - | 2201316..2201912 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| FE003_RS10690 (FE003_10690) | gspK | 2202143..2203102 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| FE003_RS10695 (FE003_10695) | xcpW | 2203102..2203803 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| FE003_RS10700 (FE003_10700) | xcpV | 2203803..2204183 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| FE003_RS10705 (FE003_10705) | - | 2204173..2204727 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| FE003_RS10710 (FE003_10710) | - | 2204737..2205345 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| FE003_RS10715 (FE003_10715) | - | 2205383..2206156 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| FE003_RS10720 (FE003_10720) | - | 2206174..2206515 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| FE003_RS10725 (FE003_10725) | - | 2206527..2207507 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| FE003_RS10730 (FE003_10730) | kdsB | 2207519..2208280 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=321718 FE003_RS10700 WP_000836911.1 2203803..2204183(-) (xcpV) [Acinetobacter baumannii strain PB364]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=321718 FE003_RS10700 WP_000836911.1 2203803..2204183(-) (xcpV) [Acinetobacter baumannii strain PB364]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |