Detailed information NTG0321699

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D0784_RS13745
• Genome accession: NZ_CP033134
• Coordinates: 2930482..2931468 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain 170502
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2925482..2936468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0784_RS13735 (D0784_13730)	-	2926295..2927635 (-)	1341	WP_114867860.1	tyrosine-type recombinase/integrase	-
D0784_RS13740 (D0784_13735)	mutS	2927808..2930393 (+)	2586	WP_122020042.1	DNA mismatch repair protein MutS	-
D0784_RS13745 (D0784_13740)	rpoS	2930482..2931468 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
D0784_RS13750 (D0784_13745)	-	2931549..2932472 (-)	924	WP_122020043.1	peptidoglycan DD-metalloendopeptidase family protein	-
D0784_RS13755 (D0784_13750)	-	2932487..2933113 (-)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
D0784_RS13760 (D0784_13755)	surE	2933113..2933889 (-)	777	WP_005531673.1	5'/3'-nucleotidase SurE	-
D0784_RS13765 (D0784_13760)	truD	2933889..2934932 (-)	1044	WP_045421902.1	tRNA pseudouridine(13) synthase TruD	-
D0784_RS13770 (D0784_13765)	ispF	2934978..2935454 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D0784_RS13775 (D0784_13770)	ispD	2935469..2936179 (-)	711	WP_050920330.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D0784_RS13780 (D0784_13775)	ftsB	2936181..2936462 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=321699 D0784_RS13745 WP_005425361.1 2930482..2931468(-) (rpoS) [Vibrio campbellii strain 170502]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=321699 D0784_RS13745 WP_005425361.1 2930482..2931468(-) (rpoS) [Vibrio campbellii strain 170502]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGTGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857