Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D0784_RS13470 Genome accession   NZ_CP033134
Coordinates   2876958..2877476 (-) Length   172 a.a.
NCBI ID   WP_010643243.1    Uniprot ID   A0A8H8YN21
Organism   Vibrio campbellii strain 170502     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2871958..2882476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS13445 (D0784_13440) rimM 2872014..2872562 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  D0784_RS13450 (D0784_13445) rpsP 2872590..2872838 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  D0784_RS13455 (D0784_13450) ffh 2873049..2874431 (-) 1383 WP_005462555.1 signal recognition particle protein -
  D0784_RS13460 (D0784_13455) - 2874645..2875439 (+) 795 WP_005426660.1 cytochrome C assembly family protein -
  D0784_RS13465 (D0784_13460) - 2875595..2876869 (+) 1275 WP_005426658.1 HlyC/CorC family transporter -
  D0784_RS13470 (D0784_13465) luxS 2876958..2877476 (-) 519 WP_010643243.1 S-ribosylhomocysteine lyase Regulator
  D0784_RS13475 (D0784_13470) - 2877566..2878171 (-) 606 WP_005438049.1 hypothetical protein -
  D0784_RS13480 (D0784_13475) gshA 2878191..2879759 (-) 1569 WP_122020023.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19086.84 Da        Isoelectric Point: 4.7297

>NTDB_id=321696 D0784_RS13470 WP_010643243.1 2876958..2877476(-) (luxS) [Vibrio campbellii strain 170502]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=321696 D0784_RS13470 WP_010643243.1 2876958..2877476(-) (luxS) [Vibrio campbellii strain 170502]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCCGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment