Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   D0784_RS11065 Genome accession   NZ_CP033134
Coordinates   2354468..2355871 (-) Length   467 a.a.
NCBI ID   WP_005433212.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2349468..2360871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS11030 (D0784_11025) moaE 2350000..2350455 (-) 456 WP_005433207.1 molybdopterin synthase catalytic subunit MoaE -
  D0784_RS11035 (D0784_11030) moaD 2350457..2350714 (-) 258 WP_045400717.1 molybdopterin synthase sulfur carrier subunit -
  D0784_RS11040 (D0784_11035) moaC 2350714..2351190 (-) 477 WP_122019887.1 cyclic pyranopterin monophosphate synthase MoaC -
  D0784_RS11045 (D0784_11040) moaB 2351217..2351729 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  D0784_RS11050 (D0784_11045) moaA 2351830..2352819 (-) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  D0784_RS11055 (D0784_11050) - 2353117..2354010 (+) 894 WP_005531401.1 YvcK family protein -
  D0784_RS11060 (D0784_11055) luxU 2354127..2354471 (-) 345 WP_045400708.1 quorum-sensing phosphorelay protein LuxU -
  D0784_RS11065 (D0784_11060) luxO 2354468..2355871 (-) 1404 WP_005433212.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  D0784_RS11070 (D0784_11065) uvrB 2356217..2358247 (-) 2031 WP_045379097.1 excinuclease ABC subunit UvrB -
  D0784_RS11080 (D0784_11075) - 2359058..2359498 (-) 441 WP_038889848.1 hypothetical protein -
  D0784_RS11085 (D0784_11080) - 2359518..2360849 (-) 1332 WP_122019888.1 excinuclease ABC subunit B -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52136.65 Da        Isoelectric Point: 5.8849

>NTDB_id=321690 D0784_RS11065 WP_005433212.1 2354468..2355871(-) (luxO) [Vibrio campbellii strain 170502]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=321690 D0784_RS11065 WP_005433212.1 2354468..2355871(-) (luxO) [Vibrio campbellii strain 170502]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACAGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAGGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAACTCTGTGAAATGGACCTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTGCGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGCTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCACCGCTGCGTGAG
CGTGGTGAAGACGTTATTGAAATTGCATACTCGCTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAGTTGCAAAACGTATTGCGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATCTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829

Multiple sequence alignment