Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   D0784_RS07540 Genome accession   NZ_CP033134
Coordinates   1629729..1631270 (-) Length   513 a.a.
NCBI ID   WP_122019541.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624729..1636270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS07520 (D0784_07520) - 1624744..1626165 (-) 1422 WP_122019536.1 lipopolysaccharide biosynthesis protein -
  D0784_RS07525 (D0784_07525) - 1626158..1627330 (-) 1173 WP_005427714.1 glycosyltransferase family 4 protein -
  D0784_RS07530 (D0784_07530) - 1627341..1628525 (-) 1185 WP_045398537.1 glycosyltransferase -
  D0784_RS07535 (D0784_07535) - 1628678..1629754 (-) 1077 WP_122019539.1 glycosyltransferase -
  D0784_RS07540 (D0784_07540) luxO 1629729..1631270 (-) 1542 WP_122019541.1 sigma-54-dependent transcriptional regulator Regulator
  D0784_RS07545 (D0784_07545) - 1631481..1631864 (-) 384 WP_045398545.1 Hpt domain-containing protein -
  D0784_RS07550 (D0784_07550) - 1631877..1632566 (-) 690 WP_122019544.1 AAA family ATPase -
  D0784_RS07555 (D0784_07555) - 1632566..1634668 (-) 2103 WP_045373956.1 SLBB domain-containing protein -
  D0784_RS07560 (D0784_07560) - 1634665..1635519 (-) 855 WP_050908985.1 OmpA family protein -
  D0784_RS07565 (D0784_07565) - 1635545..1635865 (-) 321 WP_005427675.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57568.55 Da        Isoelectric Point: 6.0776

>NTDB_id=321688 D0784_RS07540 WP_122019541.1 1629729..1631270(-) (luxO) [Vibrio campbellii strain 170502]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIEHNKPQLIILDLKLPDMSGEDVLDWINENEIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAIHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGGDI
VTLAKYFLLTYAKQDKKKFKHIGNDVQHVIKNYDWPGNVRQLQNIIRNIVVLNDEDKVTLPHLPVQLTRKPKKTPSVSPA
NAESVKETSFITEQTDSVQNEAFPTSEPTSATYSFSEPENQPTISGAQRASVYFNSDGTIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=321688 D0784_RS07540 WP_122019541.1 1629729..1631270(-) (luxO) [Vibrio campbellii strain 170502]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAGGATGAACCTTA
CGACATCTTCCACGTTGAAACTGGACGTGAGGCGATTCAATTCATTGAGCACAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGAGAAGACGTTCTTGATTGGATTAATGAGAATGAGATTCCAACCTCTGTCATCATAGCA
ACGGCGCATGGTAGCGTAGATCTAGCCGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAACCCATCAATGC
CGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGCCTTCCTATGCAGGCGGTTTACAAAACCATTGATGCTGTTGCC
CCGACCTCAGCTAGCGTGTTTATCGTTGGTGAAAGTGGAACGGGTAAAGAAGTGTGTGCCGAAGCGATTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGCGCTATCCCTCGTGATTTAATGGAAAGCGAAATATTTGGCC
ACGTAAAGGGGGCTTTTACTGGCGCGACCACCGATCGTAAAGGTGCAGCGACCCTTGCCCATGGCGGCACACTATTCTTG
GACGAACTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACGCCTCTCGG
GGGCACCAAAGAGATGAAAGTCGATGTTCGTATTATCTGTGCAACCAACCGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTGTATTATCGCGTTCATGTCGTTCCCATCGACATGCCGCCGCTAAGAGAAAGAGGTGGTGACATT
GTCACGCTAGCTAAGTACTTTTTGCTCACTTATGCCAAACAAGATAAGAAGAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAAAACTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAACATCATTCGTAACATTGTTGTATTAAATG
ATGAAGATAAGGTCACGCTACCGCACTTGCCTGTTCAACTGACTCGTAAGCCGAAAAAGACGCCTTCTGTATCGCCTGCG
AATGCTGAGAGCGTAAAAGAAACGAGCTTCATTACCGAACAAACCGACTCCGTGCAGAATGAAGCCTTTCCAACCTCGGA
GCCAACAAGCGCCACCTATTCTTTCTCTGAGCCTGAAAACCAACCAACTATCTCTGGAGCACAAAGGGCTTCAGTCTATT
TTAATTCAGACGGCACCATTCGTCCGATGTGGAAAGTCGAACGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGT
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCTTCAACGGTCTACCGCAAAAAACAAGCGTGGGAAGCAGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.799

97.076

0.483

Multiple sequence alignment