Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D0784_RS07080 Genome accession   NZ_CP033134
Coordinates   1522382..1523803 (-) Length   473 a.a.
NCBI ID   WP_038890353.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1517382..1528803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS07055 (D0784_07055) purT 1517972..1519147 (-) 1176 WP_045452693.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  D0784_RS07060 (D0784_07060) - 1519356..1520054 (+) 699 WP_122019392.1 cytidine deaminase -
  D0784_RS07065 (D0784_07065) cdd 1520118..1521005 (-) 888 WP_005427951.1 cytidine deaminase -
  D0784_RS07070 (D0784_07070) - 1521270..1521947 (-) 678 WP_122019396.1 LrgB family protein -
  D0784_RS07075 (D0784_07075) - 1521949..1522323 (-) 375 WP_012127845.1 CidA/LrgA family protein -
  D0784_RS07080 (D0784_07080) sbcB 1522382..1523803 (-) 1422 WP_038890353.1 exodeoxyribonuclease I Machinery gene
  D0784_RS07085 (D0784_07085) - 1523965..1524645 (-) 681 WP_050919688.1 DUF1826 domain-containing protein -
  D0784_RS07090 (D0784_07090) - 1524871..1526244 (-) 1374 WP_045418470.1 L-cystine transporter -
  D0784_RS07095 (D0784_07095) - 1526438..1527133 (-) 696 WP_122019400.1 NAD(P)H-binding protein -
  D0784_RS07100 (D0784_07100) - 1527799..1528410 (+) 612 WP_122019403.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54511.77 Da        Isoelectric Point: 4.8733

>NTDB_id=321687 D0784_RS07080 WP_038890353.1 1522382..1523803(-) (sbcB) [Vibrio campbellii strain 170502]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAQDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=321687 D0784_RS07080 WP_038890353.1 1522382..1523803(-) (sbcB) [Vibrio campbellii strain 170502]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCAG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCCCAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTCATGCGTGCGTGTCATGCTCTTCGTCCAGAAGGCGTAGAGTGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCCTTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATCGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGCAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCAGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTCTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTGATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGATGTGGATACACAGCTTTATGACGGTTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTGGATATTGAGTTCGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCCTGGATGAACAAGAGCAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment