Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   CDG68_RS20740 Genome accession   NZ_CP033133
Coordinates   3721263..3721589 (-) Length   108 a.a.
NCBI ID   WP_087553917.1    Uniprot ID   A0A3G2T8D3
Organism   Acinetobacter wuhouensis strain WCHAW010062     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3716263..3726589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG68_RS20720 (CDG68_20725) - 3716309..3717031 (-) 723 WP_087553913.1 FHA domain-containing protein -
  CDG68_RS20725 (CDG68_20730) gspD 3717123..3719450 (-) 2328 WP_087553914.1 type II secretion system secretin GspD -
  CDG68_RS20730 (CDG68_20735) - 3719492..3720355 (-) 864 WP_087553915.1 type II secretion system protein N -
  CDG68_RS20735 (CDG68_20740) gspN 3720355..3721098 (-) 744 WP_087553916.1 type II secretion system protein N -
  CDG68_RS20740 (CDG68_20745) hns 3721263..3721589 (-) 327 WP_087553917.1 H-NS family nucleoid-associated regulatory protein Regulator
  CDG68_RS20745 (CDG68_20750) - 3721804..3722238 (-) 435 WP_068973041.1 acyl-CoA thioesterase -
  CDG68_RS20750 (CDG68_20755) - 3722246..3723439 (-) 1194 WP_087553918.1 hypothetical protein -
  CDG68_RS20755 (CDG68_20760) - 3723444..3724277 (-) 834 WP_087553919.1 hypothetical protein -
  CDG68_RS20760 (CDG68_20765) - 3724274..3725053 (-) 780 WP_087553920.1 uroporphyrinogen-III synthase -
  CDG68_RS20765 (CDG68_20770) hemC 3725067..3725990 (-) 924 WP_213071529.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12337.10 Da        Isoelectric Point: 8.4122

>NTDB_id=321672 CDG68_RS20740 WP_087553917.1 3721263..3721589(-) (hns) [Acinetobacter wuhouensis strain WCHAW010062]
MMPDISNLSVEELRKLTAEAEALIESKKDQAVEDAYNQIIKIAESAGLTLEQFIEYGAQKRKKTTRKVVEPRYRNKNNAA
DTWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=321672 CDG68_RS20740 WP_087553917.1 3721263..3721589(-) (hns) [Acinetobacter wuhouensis strain WCHAW010062]
ATGATGCCTGATATTAGTAATTTATCGGTTGAAGAGTTAAGGAAATTAACAGCTGAAGCAGAAGCATTAATTGAATCTAA
AAAAGATCAAGCTGTTGAAGACGCATATAATCAAATTATTAAAATTGCAGAGTCTGCTGGTTTGACTTTAGAGCAGTTCA
TTGAGTATGGCGCGCAAAAACGCAAAAAAACGACGCGTAAAGTTGTAGAGCCACGTTACCGTAATAAAAATAACGCTGCA
GATACTTGGACGGGTCGTGGTAAACAACCGCGCTGGTTAGTTGCAGAAATTGAAAAAGGTGCAAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2T8D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815

Multiple sequence alignment