Detailed information NTG0321670

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FEV15_RS20990
• Genome accession: NZ_CP040397
• Coordinates: 4309226..4310218 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BA22372
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4304226..4315218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEV15_RS20970 (FEV15_20970)	otnK	4305001..4306263 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
FEV15_RS20975 (FEV15_20975)	ygbL	4306260..4306898 (+)	639	WP_001278994.1	aldolase	-
FEV15_RS20980 (FEV15_20980)	ygbM	4306903..4307679 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
FEV15_RS20985 (FEV15_20985)	ygbN	4307768..4309132 (+)	1365	WP_000104456.1	GntP family transporter	-
FEV15_RS20990 (FEV15_20990)	rpoS	4309226..4310218 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FEV15_RS20995 (FEV15_20995)	nlpD	4310281..4311375 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FEV15_RS21000 (FEV15_21000)	pcm	4311560..4312186 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FEV15_RS21005 (FEV15_21005)	surE	4312180..4312941 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
FEV15_RS21010 (FEV15_21010)	truD	4312922..4313971 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FEV15_RS21015 (FEV15_21015)	ispF	4313968..4314447 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FEV15_RS21020 (FEV15_21020)	ispD	4314447..4315157 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=321670 FEV15_RS20990 WP_000081550.1 4309226..4310218(-) (rpoS) [Escherichia coli strain BA22372]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=321670 FEV15_RS20990 WP_000081550.1 4309226..4310218(-) (rpoS) [Escherichia coli strain BA22372]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715