Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EAO82_RS17715 Genome accession   NZ_CP033116
Coordinates   3851157..3852536 (-) Length   459 a.a.
NCBI ID   WP_096345115.1    Uniprot ID   A0AA91U5A2
Organism   Halopseudomonas pelagia strain Kongs-67     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3846157..3857536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAO82_RS17700 (EAO82_17795) ettA 3847535..3849199 (+) 1665 WP_096345112.1 energy-dependent translational throttle protein EttA -
  EAO82_RS17705 (EAO82_17800) gdhA 3849366..3850706 (+) 1341 WP_096345113.1 NADP-specific glutamate dehydrogenase -
  EAO82_RS17710 (EAO82_17805) - 3850762..3851118 (+) 357 WP_096345114.1 PilZ domain-containing protein -
  EAO82_RS17715 (EAO82_17810) radA 3851157..3852536 (-) 1380 WP_096345115.1 DNA repair protein RadA Machinery gene
  EAO82_RS17720 (EAO82_17815) - 3852647..3853408 (+) 762 WP_096345116.1 EAL domain-containing protein -
  EAO82_RS17725 (EAO82_17820) pap 3853401..3854858 (+) 1458 WP_096345117.1 polyphosphate:AMP phosphotransferase -
  EAO82_RS17730 (EAO82_17825) mscL 3854953..3855369 (+) 417 WP_096345118.1 large-conductance mechanosensitive channel protein MscL -
  EAO82_RS17735 (EAO82_17830) - 3855494..3856627 (+) 1134 WP_096345119.1 methyltransferase -
  EAO82_RS17740 (EAO82_17835) - 3856683..3856811 (-) 129 WP_096345120.1 DUF2256 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49130.56 Da        Isoelectric Point: 7.4032

>NTDB_id=321628 EAO82_RS17715 WP_096345115.1 3851157..3852536(-) (radA) [Halopseudomonas pelagia strain Kongs-67]
MAKNKRIYGCTECGATFSKWAGQCAECQAWNTLVETVVDTTPTGGSGVSASRTGHWAGQAAQVRTLAEVSTEEVPRQSSG
SSELDRVLGGGLVAGSVVLMGGDPGIGKSTILLQTLCQLAQSMPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIE
SIIATARHEQPKVMVVDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTV
LYFEGESDGRLRMLRAVKNRFGAVNELGVFSMTDKGLKEVSNPSAIFLSRYDTPIPGSVVMSTWEGSRPMLVEVQALVDT
SHLGNPRRVTLGLDQNRLAMLLAVLHRHGGVPTYDQDVFVNVVGGVKVLETAVDLALLAAVMSSLRNRPLPMDLMVFGEL
GLSGEIRPVPSGQERLKEAAKHGFTRAIVPKANAPKESPKGMQVIAVTRLDQALAAIFD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=321628 EAO82_RS17715 WP_096345115.1 3851157..3852536(-) (radA) [Halopseudomonas pelagia strain Kongs-67]
ATGGCAAAAAACAAGCGAATTTATGGCTGCACCGAATGCGGTGCGACTTTCTCCAAATGGGCCGGCCAGTGCGCTGAATG
CCAGGCCTGGAACACGCTTGTGGAAACGGTAGTCGATACCACCCCTACTGGTGGCAGTGGCGTTTCGGCCAGCCGCACCG
GACACTGGGCAGGGCAGGCCGCTCAGGTAAGAACGCTGGCAGAAGTCTCTACCGAGGAGGTGCCGCGCCAATCCAGCGGC
TCTTCGGAGCTGGATCGCGTGTTGGGTGGCGGCCTGGTCGCGGGCTCGGTGGTGTTGATGGGCGGGGATCCAGGTATAGG
CAAATCGACCATTTTGCTGCAGACCTTGTGTCAGTTGGCGCAAAGCATGCCGGCGTTGTATGTCACCGGGGAAGAATCCC
AGCAACAGGTGGCGATGCGCGCGCGGCGATTGGGGCTGCCGGAAGACAAGCTCAAGGTCATGACCGAGACCTGCATTGAA
AGCATCATTGCCACCGCCCGGCATGAGCAGCCGAAAGTCATGGTGGTGGATTCGATTCAGACGATCTTCACCGAACAGTT
GCAATCGGCTCCCGGTGGCGTAGCGCAGGTTCGCGAGAGCGCGGCGCTGCTGGTGCGTTATGCCAAACAGAGTGGCACGG
CGATCTTTCTGGTCGGGCACGTGACCAAGGAGGGTTCGTTGGCCGGGCCGCGCGTGCTCGAGCATATGGTCGATACCGTG
CTGTATTTCGAAGGCGAGTCTGATGGTCGGCTGCGCATGCTGCGCGCGGTAAAGAATCGCTTCGGTGCGGTGAACGAACT
TGGCGTGTTTTCAATGACGGACAAGGGGCTCAAGGAGGTCTCCAACCCGTCGGCCATTTTCCTTTCACGTTACGATACGC
CGATTCCCGGAAGCGTAGTGATGTCGACCTGGGAGGGCTCCAGGCCGATGCTGGTGGAGGTGCAGGCACTGGTGGACACC
AGTCATCTGGGTAATCCGCGGCGGGTCACGCTGGGCCTGGATCAGAACCGGTTGGCCATGTTGCTGGCAGTGTTGCACCG
CCATGGCGGGGTGCCGACCTACGATCAGGATGTGTTCGTTAACGTGGTGGGCGGGGTCAAGGTATTGGAAACCGCGGTAG
ATCTGGCGCTGCTCGCAGCGGTCATGTCCAGCCTACGCAATCGGCCGTTGCCGATGGATCTGATGGTGTTCGGTGAGTTG
GGCTTGTCCGGCGAGATACGGCCGGTACCCAGCGGTCAGGAACGTTTGAAGGAAGCGGCCAAGCACGGCTTTACCCGCGC
TATTGTGCCCAAGGCCAATGCTCCCAAAGAGTCGCCCAAGGGCATGCAGGTGATTGCTGTGACCCGTCTGGATCAAGCAT
TGGCGGCGATATTCGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-225)

Subunit ChlI of Mg-chelatase (ChlI)

(353-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.481
  radA Streptococcus pneumoniae Rx1

46.623

100

0.466
  radA Streptococcus pneumoniae D39

46.623

100

0.466
  radA Streptococcus pneumoniae R6

46.623

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.623

100

0.466
  radA Streptococcus mitis NCTC 12261

46.405

100

0.464
  radA Streptococcus mitis SK321

46.405

100

0.464

Multiple sequence alignment