Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   FE198_RS25020 Genome accession   NZ_CP040390
Coordinates   5055610..5056635 (+) Length   341 a.a.
NCBI ID   WP_000644908.1    Uniprot ID   -
Organism   Escherichia coli strain A1_136     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5050610..5061635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE198_RS25010 (FE198_25010) rpmE 5052841..5053053 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  FE198_RS25015 (FE198_25015) priA 5053256..5055454 (+) 2199 WP_001550368.1 primosomal protein N' Machinery gene
  FE198_RS25020 (FE198_25020) cytR 5055610..5056635 (+) 1026 WP_000644908.1 DNA-binding transcriptional regulator CytR Regulator
  FE198_RS25025 (FE198_25025) ftsN 5056727..5057686 (+) 960 WP_000068834.1 cell division protein FtsN -
  FE198_RS25030 (FE198_25030) hslV 5057779..5058309 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  FE198_RS25035 (FE198_25035) hslU 5058319..5059650 (+) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  FE198_RS25040 (FE198_25040) menA 5059717..5060643 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  FE198_RS25045 (FE198_25045) rraA 5060736..5061221 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  FE198_RS25050 (FE198_25050) zapB 5061306..5061551 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37847.80 Da        Isoelectric Point: 6.3842

>NTDB_id=321586 FE198_RS25020 WP_000644908.1 5055610..5056635(+) (cytR) [Escherichia coli strain A1_136]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=321586 FE198_RS25020 WP_000644908.1 5055610..5056635(+) (cytR) [Escherichia coli strain A1_136]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625

Multiple sequence alignment