Detailed information NTG0321490

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FEL12_RS21350
• Genome accession: NZ_CP040316
• Coordinates: 4309314..4310306 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CV261
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4304314..4315306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEL12_RS21325 (FEL12_21970)	pphB	4305676..4306332 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
FEL12_RS21330 (FEL12_21975)	-	4306373..4306609 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FEL12_RS21335 (FEL12_21980)	-	4306620..4308047 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FEL12_RS21340 (FEL12_21985)	-	4308047..4308640 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FEL12_RS21345 (FEL12_21990)	-	4308787..4309194 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
FEL12_RS21350 (FEL12_21995)	rpoS	4309314..4310306 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FEL12_RS21355 (FEL12_22000)	nlpD	4310369..4311463 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
FEL12_RS21360 (FEL12_22005)	pcm	4311648..4312274 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FEL12_RS21365 (FEL12_22010)	surE	4312268..4313029 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FEL12_RS21370 (FEL12_22015)	truD	4313010..4314059 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
FEL12_RS21375 (FEL12_22020)	ispF	4314056..4314535 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FEL12_RS21380 (FEL12_22025)	ispD	4314535..4315245 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=321490 FEL12_RS21350 WP_000081550.1 4309314..4310306(-) (rpoS) [Escherichia coli strain CV261]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=321490 FEL12_RS21350 WP_000081550.1 4309314..4310306(-) (rpoS) [Escherichia coli strain CV261]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715