Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FEL12_RS06445 Genome accession   NZ_CP040316
Coordinates   1373455..1374060 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CV261     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1368455..1379060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEL12_RS06415 (FEL12_06550) rsmS 1369157..1369321 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  FEL12_RS06420 (FEL12_06555) priC 1369335..1369862 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  FEL12_RS06425 (FEL12_06560) ybaN 1369932..1370309 (+) 378 WP_001188905.1 DUF454 family protein -
  FEL12_RS06430 (FEL12_06565) apt 1370462..1371013 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  FEL12_RS06435 (FEL12_06570) dnaX 1371142..1373073 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  FEL12_RS06440 (FEL12_06575) ybaB 1373126..1373455 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FEL12_RS06445 (FEL12_06580) recR 1373455..1374060 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FEL12_RS06450 (FEL12_06585) htpG 1374170..1376044 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  FEL12_RS06455 (FEL12_06590) adk 1376225..1376869 (+) 645 WP_001220233.1 adenylate kinase -
  FEL12_RS06460 (FEL12_06595) hemH 1377001..1377963 (+) 963 WP_021501080.1 ferrochelatase -
  FEL12_RS06465 (FEL12_06600) aes 1377960..1378919 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=321458 FEL12_RS06445 WP_001195025.1 1373455..1374060(+) (recR) [Escherichia coli strain CV261]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=321458 FEL12_RS06445 WP_001195025.1 1373455..1374060(+) (recR) [Escherichia coli strain CV261]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443