Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EAW52_RS17635 Genome accession   NZ_CP033105
Coordinates   3771932..3773293 (-) Length   453 a.a.
NCBI ID   WP_074822920.1    Uniprot ID   A0A9X8MA77
Organism   Pseudomonas sp. LTJR-52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3766932..3778293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAW52_RS17615 (EAW52_17615) yjiA 3767919..3768896 (-) 978 WP_122043393.1 GTPase -
  EAW52_RS17620 (EAW52_17620) - 3768965..3769168 (-) 204 WP_010797159.1 YbdD/YjiX family protein -
  EAW52_RS17625 (EAW52_17625) - 3769181..3771247 (-) 2067 WP_074822916.1 carbon starvation CstA family protein -
  EAW52_RS17630 (EAW52_17630) - 3771556..3771921 (+) 366 WP_010797157.1 PilZ domain-containing protein -
  EAW52_RS17635 (EAW52_17635) radA 3771932..3773293 (-) 1362 WP_074822920.1 DNA repair protein RadA Machinery gene
  EAW52_RS17640 (EAW52_17640) - 3773393..3773995 (-) 603 WP_122044851.1 ankyrin repeat domain-containing protein -
  EAW52_RS17645 (EAW52_17645) - 3774178..3775719 (-) 1542 WP_010797154.1 catalase -
  EAW52_RS17650 (EAW52_17650) - 3775889..3776125 (-) 237 WP_010797153.1 YdcH family protein -
  EAW52_RS17655 (EAW52_17655) mscL 3776329..3776775 (+) 447 WP_010797152.1 large-conductance mechanosensitive channel protein MscL -
  EAW52_RS17660 (EAW52_17660) - 3776820..3777596 (-) 777 WP_122043394.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48441.88 Da        Isoelectric Point: 6.6983

>NTDB_id=321420 EAW52_RS17635 WP_074822920.1 3771932..3773293(-) (radA) [Pseudomonas sp. LTJR-52]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETVVESAAGASGRGGWAGQQAVLKTLAEVSVEETPRFTTDSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCRIAERMPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETSIESIIATA
RQEKPRVMVVDSIQTIFTEHLQSAPGGVAQVRESAALLVRFAKQTGTAVFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTVGLDQNRLAMLLAVLHRHGGIPTYDQDVFINVVGGVKVLETAVDLALMAAVISSLRDRPLPHDLLVFGEIGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLEVVAVTRLDQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=321420 EAW52_RS17635 WP_074822920.1 3771932..3773293(-) (radA) [Pseudomonas sp. LTJR-52]
ATGGCCAAAGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCAACGTTTCCCAAATGGGCAGGGCAGTGTGGCGAGTG
CGGCGCCTGGAACACGCTTGTCGAAACGGTTGTTGAGTCAGCGGCCGGTGCCTCCGGCCGTGGCGGCTGGGCGGGCCAGC
AGGCCGTGCTCAAGACATTGGCCGAGGTCAGCGTTGAGGAAACTCCACGCTTCACTACAGACTCCACAGAGCTGGACCGC
GTACTGGGTGGTGGCTTGGTCGATGGGTCGGTTGTGCTGATCGGCGGTGATCCAGGCATTGGTAAATCCACCATTTTGCT
ACAGACGCTTTGCCGCATTGCCGAGCGTATGCCAGCACTTTATGTGACAGGCGAAGAGTCCCAGCAACAGGTGGCCATGC
GGGCCCGGCGCCTTGGGCTGCCGGAAGACAAACTCAAGGTCATGACCGAGACGAGCATCGAGAGCATCATCGCCACGGCA
CGTCAGGAAAAGCCGCGGGTCATGGTAGTGGACTCCATCCAGACCATTTTTACTGAGCATCTTCAATCCGCACCGGGTGG
CGTTGCCCAGGTGCGTGAAAGCGCGGCACTTCTGGTGCGTTTTGCCAAACAGACCGGAACGGCTGTGTTTTTGGTTGGGC
ATGTGACGAAGGAGGGTGCCCTGGCGGGTCCGCGCGTGCTTGAGCACATGGTGGACACTGTTCTGTATTTCGAGGGCGAG
TCGGATGGCCGTCTGCGTTTGCTTCGGGCAGTGAAAAACCGCTTCGGTGCTGTAAATGAGCTGGGTGTTTTCGGAATGAC
CGATAAAGGCCTGAAGGAAGTATCCAACCCGTCGGCCATTTTTCTGACCCGTGCACAAGAGGCCGTGCCAGGCAGTGTGG
TCATGGCTACCTGGGAAGGCTCCCGACCAATGCTGGTTGAGGTACAGGCCCTGGTCGATACCAGTCACTTGGCCAACCCG
CGTCGGGTGACGGTCGGTCTCGATCAGAACCGTCTGGCCATGCTGTTGGCCGTATTGCACCGCCATGGCGGTATTCCCAC
CTATGACCAGGACGTGTTTATAAACGTCGTTGGCGGTGTGAAGGTGTTGGAAACAGCTGTGGACCTGGCCTTGATGGCAG
CGGTTATCTCCAGCCTACGTGACCGCCCCTTGCCGCACGACCTGCTGGTCTTTGGCGAGATCGGTCTTTCGGGTGAGATT
CGTCCAGTGCCCAGTGGACAGGAGCGCTTGAAGGAAGCCGCCAAGCATGGCTTCAAGCGCGCCATCGTACCTAAAGGCAA
TGCCCCTAAGGAGGCACCCGCTGGTCTTGAAGTGGTCGCAGTGACCCGTCTTGACCAGGCGCTGGATGCCTTATTCGAGT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-427)

AAA domain (AAA_25)

(72-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.119

100

0.492
  radA Streptococcus pneumoniae Rx1

45.852

100

0.464
  radA Streptococcus pneumoniae D39

45.852

100

0.464
  radA Streptococcus pneumoniae R6

45.852

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.852

100

0.464
  radA Streptococcus mitis NCTC 12261

45.633

100

0.461
  radA Streptococcus mitis SK321

45.815

100

0.459

Multiple sequence alignment