Detailed information NTG0321412

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FEL10_RS21380
• Genome accession: NZ_CP040314
• Coordinates: 4315479..4316471 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MA11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4310479..4321471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEL10_RS21355 (FEL10_21990)	pphB	4311841..4312497 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
FEL10_RS21360 (FEL10_21995)	-	4312538..4312774 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FEL10_RS21365 (FEL10_22000)	-	4312785..4314212 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FEL10_RS21370 (FEL10_22005)	-	4314212..4314805 (-)	594	WP_000767713.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FEL10_RS21375 (FEL10_22010)	-	4314952..4315359 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
FEL10_RS21380 (FEL10_22015)	rpoS	4315479..4316471 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FEL10_RS21385 (FEL10_22020)	nlpD	4316534..4317628 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
FEL10_RS21390 (FEL10_22025)	pcm	4317813..4318439 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FEL10_RS21395 (FEL10_22030)	surE	4318433..4319194 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FEL10_RS21400 (FEL10_22035)	truD	4319175..4320224 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
FEL10_RS21405 (FEL10_22040)	ispF	4320221..4320700 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FEL10_RS21410 (FEL10_22045)	ispD	4320700..4321410 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=321412 FEL10_RS21380 WP_000081550.1 4315479..4316471(-) (rpoS) [Escherichia coli strain MA11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=321412 FEL10_RS21380 WP_000081550.1 4315479..4316471(-) (rpoS) [Escherichia coli strain MA11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715